SAMPLES DESCRIPTION RUN DESCIPTION FASTQ DESCRIPTION REFERENCE GENOME BAM DESCRITPION COUNT TABLE DESCRIPTION DEPOSITORY DESCRIPTION ID Variété tissus espèces inoculées Tissus infos date replicat complément d’infos Nb total de lecture % lectures fongiques Nb total de lectures fongiques % lectures Lmb-Jn3 Nb llectures Lmb-Jn3 avrlm3 avrlm4-7 % lecture Lbb-G12-14 Nb lecture Lbb-G12-14 Extract protocol Library construction protocol Library strategy Library type Sequencing center Instrument model Raw file1 Raw file2 "Fastq Location in Bioinfo.bioger" "Fastq Location in local DDE" "md5 file1 Location in local DDE" "md5 file2 Location in local DDE" "Genome reference (L. maculans brassicae JN3; L. biglobosa brasssicae G12-14)" "Genome reference B.napus Location in Bioinfo.bioger" "Mapping file on L.maculans brassicae-JN3 and L.biglobosabrassicae-G12-14 Location in Bioinfo.bioger" "BAM on L.maculans brassicae-JN3 and L.biglobosabrassicae-G12-14 Local DDE " "BAM on B.napus Location in Bioinfo.bioger" "BAM on B.napus Local DDE " "Lmb-JN2 count tables Name" "Lbb-G1214 count tables Name" "B.napus count tables Name" "B.napus count tables Location in Bioinfo.Bioger" "Fungal count tables Location in Bioinfo.Bioger" "Fungal and plant count tables Location in local DDE" Project Contributors Sample SRA ID SRA BioProject ID Paper submission C11M16 carinata Disques foliaires NA spot gris 16_11_2017 11 NA 86966871 0,477606007 415359 0,001362588 1185 NA NA 0,420668234 365842 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 C11M16_R1_001.paired.trim.fastq.gz C11M16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" f08cc6a1d6ce7839f10064fb413a8fe5 56a245316fdb088a0f13b48dc8178304 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C11M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C11M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_C11M16.count G1214_C11M16.count Bnapus_C11M16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C11M16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C11M16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 C11M29 carinata Disques foliaires NA spot gris 29_11_2017 11 NA 83301599 1,713830247 1427648 0,002537766 2114 NA NA 1,506344434 1254809 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 C11M29_R1_001.paired.trim.fastq.gz C11M29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" e89809617afaf41dddcfe315b233fc62 d1ff397e490bedd30c96e4f0283d6665 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C11M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C11M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_C11M29.count G1214_C11M29.count Bnapus_C11M29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C11M29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C11M29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 C1M16 carinata Disques foliaires NA spot gris 16_11_2017 1 NA 82715737 0,706495549 584383 0,003334311 2758 NA NA 0,62483636 516838 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 C1M16_R1_001.paired.trim.fastq.gz C1M16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 7023418d62223005068fb25f3d1529ac 023542ac788b5983357d8af07aecae3e JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C1M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C1M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_C1M16.count G1214_C1M16.count Bnapus_C1M16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C1M16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C1M16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 C1M29 carinata Disques foliaires NA spot gris 29_11_2017 1 NA 82946516 0,885952823 734867 0,002573948 2135 NA NA 0,772021576 640365 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 C1M29_R1_001.paired.trim.fastq.gz C1M29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 9d5dd4dc1d88d37b3d64e77587475bd9 611a06962b83b38ed4747a0216b8fde2 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C1M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C1M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_C1M29.count G1214_C1M29.count Bnapus_C1M29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C1M29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C1M29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 C25M16 carinata Disques foliaires NA spot gris 16_11_2017 25 NA 81547177 0,405884069 330987 0,003433595 2800 NA NA 0,351636943 286750 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 C25M16_R1_001.paired.trim.fastq.gz C25M16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 5f537739393f13757359294851f7bc85 8dbd547a98bb66a55e888ea066ec86af JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C25M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C25M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_C25M16.count G1214_C25M16.count Bnapus_C25M16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C25M16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C25M16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 C25M29 carinata Disques foliaires NA spot gris 29_11_2017 25 NA 86310841 1,607734305 1387649 0,005534647 4777 NA NA 1,388578753 1198494 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 C25M29_R1_001.paired.trim.fastq.gz C25M29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 37186d19e09c205aae0350a490f875aa dd07c791f9199d098674dda08f5fc750 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C25M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C25M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_C25M29.count G1214_C25M29.count Bnapus_C25M29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_C25M29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/C25M29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D17M16 Darmor Disques foliaires NA macule typique 16_11_2017 17 NA 61366457 3,490137943 2141774 3,120770032 1915106 NA NA 0,026121762 16030 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D17M16_R1_001.paired.trim.fastq.gz D17M16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 7662e855464db16ae3dd056338765643 25c17646c981e322e4e0397801534e0f JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D17M16.count G1214_D17M16.count Bnapus_D17M16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17M16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17M16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 ERS4822237 PRJEB39398 Gay et al, 2020 D17M29 Darmor Disques foliaires NA macule typique 29_11_2017 17 NA 69596232 9,380986315 6528813 8,434035624 5869771 NA NA 0,120786712 84063 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D17M29_R1_001.paired.trim.fastq.gz D17M29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" f73361f55bab3c62368e63eb4ea400e7 bae8cafbb1caf308d0f69c20fd26bafa JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D17M29.count G1214_D17M29.count Bnapus_D17M29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17M29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17M29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 ERS4822240 PRJEB39398 Gay et al, 2020 D17SM16 Darmor Disques foliaires NA sans symptome 16_11_2017 17 NA 83255911 0,024704552 20568 0,019506123 16240 NA NA 0,001417317 1180 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D17SM16_R1_001.paired.trim.fastq.gz D17SM16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" f0a9ef4480bb4fe4ca491b7dc211a4e2 73181fd99bc9d8f57efc289308e6a518 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17SM16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17SM16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D17SM16.count G1214_D17SM16.count Bnapus_D17SM16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17SM16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17SM16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D17SM29 Darmor Disques foliaires NA sans symptome 29_11_2017 17 NA 84895354 0,018245993 15490 0,011138419 9456 NA NA 0,002261608 1920 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D17SM29_R1_001.paired.trim.fastq.gz D17SM29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 050bdaeb1a34e10e2c7fd48477af1110 4dff1a0f70d2c1a551375cb629939ae9 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17SM29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17SM29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D17SM29.count G1214_D17SM29.count Bnapus_D17SM29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17SM29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17SM29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D17X16 Darmor Disques foliaires NA spot noir 16_11_2017 17 NA 79573241 0,264238326 210263 0,175376795 139553 NA NA 0,064406073 51250 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D17X16_R1_001.paired.trim.fastq.gz D17X16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 3ba740da1dff6b34b7d9007fb175ec66 cfa08753c6d1da53b6c818f7595c3e3f JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17X16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17X16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D17X16.count G1214_D17X16.count Bnapus_D17X16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17X16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17X16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D17X29 Darmor Disques foliaires NA spot noir 29_11_2017 17 NA 95819885 0,185835122 178067 0,106785768 102322 NA NA 0,058615182 56165 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D17X29_R1_001.paired.trim.fastq.gz D17X29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" c7f44ddf46dd55d6ee6f7b224409fc47 509cc71cec7bfbbdd46909dfe0b8d3b5 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17X29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17X29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D17X29.count G1214_D17X29.count Bnapus_D17X29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D17X29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D17X29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D22M16 Darmor Disques foliaires NA macule typique 16_11_2017 22 NA 83877865 4,562517179 3826942 4,151792609 3482435 NA NA 0,00697085 5847 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D22M16_R1_001.paired.trim.fastq.gz D22M16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 2eef7ddc6fe0041eaf3b11093b6b33af 03a2ea050120d3a7b064e5180ff2e66d JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D22M16.count G1214_D22M16.count Bnapus_D22M16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22M16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22M16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 ERS4822236 PRJEB39398 Gay et al, 2020 D22M29 Darmor Disques foliaires NA macule typique 29_11_2017 22 NA 64354811 6,080684473 3913213 5,515494405 3549486 NA NA 0,030367582 19543 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D22M29_R1_001.paired.trim.fastq.gz D22M29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" cc21b64ff4ca1cc0d3a73c5adad28c9c 4ea02aa023e499e7975b5e74c9d6fe7a JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D22M29.count G1214_D22M29.count Bnapus_D22M29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22M29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22M29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 ERS4822239 PRJEB39398 Gay et al, 2020 D22SM16 Darmor Disques foliaires NA sans symptome 16_11_2017 22 NA 83649830 0,03787814 31685 0,03042684 25452 NA NA 0,001855353 1552 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D22SM16_R1_001.paired.trim.fastq.gz D22SM16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" A récuperer dans MH1810036 A récuperer dans MH1810036 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22SM16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22SM16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D22SM16.count G1214_D22SM16.count Bnapus_D22SM16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22SM16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22SM16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D22SM29 Darmor Disques foliaires NA sans symptome 29_11_2017 22 NA 76112439 0,01330006 10123 0,008437517 6422 NA NA 0,001556907 1185 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D22SM29_R1_001.paired.trim.fastq.gz D22SM29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" b5c8bd9c4b7825eb32282a93d3d3874f 04c252db5a2e5f5c4ce5513c5c2583b7 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22SM29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22SM29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D22SM29.count G1214_D22SM29.count Bnapus_D22SM29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22SM29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22SM29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D22X16 Darmor Disques foliaires NA spot noir 16_11_2017 22 NA 76301397 0,334528606 255250 0,109872169 83834 NA NA 0,182946847 139591 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D22X16_R1_001.paired.trim.fastq.gz D22X16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 5422ac36d0e5d6edadc3c21257bbfa77 615ea69a4a48a722085503f19e8831a4 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22X16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22X16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D22X16.count G1214_D22X16.count Bnapus_D22X16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22X16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22X16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D22X29 Darmor Disques foliaires NA spot noir 29_11_2017 22 NA 64597658 0,198010275 127910 0,120253586 77681 NA NA 0,057859683 37376 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D22X29_R1_001.paired.trim.fastq.gz D22X29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 58fa65dc19ba0826ccd6a60973891aae 150b853d8ef765ccd9654408cb923f65 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22X29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22X29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D22X29.count G1214_D22X29.count Bnapus_D22X29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D22X29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D22X29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D31M16 Darmor Disques foliaires NA macule typique 16_11_2017 31 NA 79646788 3,267824184 2602717 2,910633383 2318226 NA NA 0,038882924 30969 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D31M16_R1_001.paired.trim.fastq.gz D31M16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 9c82e7558ff98776c6520f4ca825b958 90613164d7d4fe576b237a37af6f02fa JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31M16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D31M16.count G1214_D31M16.count Bnapus_D31M16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31M16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31M16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 ERS4822235 PRJEB39398 Gay et al, 2020 D31M29 Darmor Disques foliaires NA macule typique 29_11_2017 31 NA 99430927 7,731107646 7687112 6,860960876 6821917 NA NA 0,178219197 177205 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D31M29_R1_001.paired.trim.fastq.gz D31M29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" fb60494b4571acd27b5861a826337de8 8dc0de2066536ed863197e4b8afd5ded JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31M29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D31M29.count G1214_D31M29.count Bnapus_D31M29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31M29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31M29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 ERS4822238 PRJEB39398 Gay et al, 2020 D31SM16 Darmor Disques foliaires NA sans symptome 16_11_2017 31 NA 92826761 0,049257347 45724 0,042773226 39705 NA NA 0,000800416 743 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D31SM16_R1_001.paired.trim.fastq.gz D31SM16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" A récuperer dans MH1810038 A récuperer dans MH1810038 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31SM16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31SM16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D31SM16.count G1214_D31SM16.count Bnapus_D31SM16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31SM16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31SM16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D31SM29 Darmor Disques foliaires NA sans symptome 29_11_2017 31 NA 71033970 0,014549377 10335 0,009585555 6809 NA NA 0,001185348 842 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D31SM29_R1_001.paired.trim.fastq.gz D31SM29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 00eefced013d0ecad3a6acc92e3d7f84 c31c105dd25e5eb50376e62964d76975 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31SM29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31SM29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D31SM29.count G1214_D31SM29.count Bnapus_D31SM29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31SM29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31SM29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D31X16 Darmor Disques foliaires NA spot noir 16_11_2017 31 NA 82254891 0,079207448 65152 0,010399382 8554 NA NA 0,058685872 48272 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D31X16_R1_001.paired.trim.fastq.gz D31X16_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" 3acc3ab31b843b7d60e15dd037ff8755 de76b51226541ff1760adb3f7581e320 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31X16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31X16/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D31X16.count G1214_D31X16.count Bnapus_D31X16.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31X16/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31X16/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2 D31X29 Darmor Disques foliaires NA spot noir 29_11_2017 31 NA 34702837 0,164637836 57134 0,036227586 12572 NA NA 0,108783613 37751 Trizol , Phenol Chloroform TrueSeq Standard mRNA kit 101 paired-end cDNA GENEWIZE HiSeq Illumina 4000 D31X29_R1_001.paired.trim.fastq.gz D31X29_R2_001.paired.trim.fastq.gz ~/../../projects/leptolife/work/fastq_champs_2017/trimmomatic_result/ "hard drive : office : 157 ; MyBook 8T ; folder : trimmomatic_result" f748ae6e6b1cfed7650a313ae01e25b2 b4a7e5fd3e60ee5b74d9830b109d0677 JN3.fasta and G1214.fasta (Dutreux et al, 2018) – concatenated projects/leptolife/data/genome_Bnapus/download_from_web/Brassica_napus_v4.1.chromosomes.fasta ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31X29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ;" ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31X29/All_properly_paired.bam "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" JN3_D31X29.count G1214_D31X29.count Bnapus_D31X29.count ~/../../projects/leptolife/work/fastq_champs_2017/mapping_BN_D31X29/ ~/../../projects/leptolife/work/fastq_champs_2017/fungal_mapping/D31X29/ "hard drive : office : 157 ; MyBook 8T ; related person : Elise GAY" LeptoLife2