SAMPLES DESCRIPTION RUN DESCIPTION FASTQ DESCRIPTION REFERENCE GENOME REFERENCE GENOME BAM DESCRITPION COUNT TABLE DESCRIPTION DEPOSITORY DESCRIPTION ID BIL_ID Variété tissus espèces inoculées Tissus infos date replicat complément d’infos Nb total de lecture % lectures fongiques Nb total de lectures fongiques % lectures Lmb-Jn3 Nb llectures Lmb-Jn3 avrlm3 avrlm4-7 % lecture Lbb-G12-14 Nb lecture Lbb-G12-14 Extract protocol Library construction protocol Library strategy Library type Sequencing center Instrument model Raw file1 Raw file2 "Fastq Location TGCC center" "Fastq Location DDE" "Fastq Location on Bioinfo.bioger" "md5 file1 (also available in DDE Lacie, office 157 BIOGER) Location TGCC center" "md5 file2 (also available in DDE Lacie, office 157 BIOGER) Location TGCC center" "Genome reference (L. maculans brassicae JN3; L. biglobosa brasssicae G12-14)" Genome reference B.napus "Mapping file on L.maculans brassicae-JN3 and L.biglobosabrassicae-G12-14 NAME" "BAM on L.maculans brassicae-JN3 and L.biglobosabrassicae-G12-14 Location in TGCC center" "BAM on L.maculans brassicae-JN3 and L.biglobosabrassicae-G12-14 Location on local DDE" "BAM on B.napus Location in TGCC" "Lmb-JN2 count tables Name" "Lbb G12-14 count tables Name" "B. napus count tables Name" "B.napus count tables Location in TGCC center" "Fungal count tables Location in TGCC center" "Fungal count tables Location DDE" Project Contributors Sample SRA ID SRA BioProject ID Paper submission AHR BIL179 Darmor-BZH Cotyledons H2O centre J9 Rep1 NA 74883891 0,028377265 21250 0,028349221 21229 0 0 2,80434E-05 21 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHROSW_2_1_C7C2PACXX.IND9_noribo_clean.fastq BIL_AHROSW_2_2_C7C2PACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHR " office : 157 ; Lacie 10T " /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHR/AHRAligned.sortedByCoord.out.bam JN3_AHR.count G1214_AHR.count AHR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHR/counts/AHR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALB BIL230 Darmor-BZH Cotyledons H2O centre J9 rep2 NA 75555887 0,00092779 701 0,00090132 681 0 0 2,64705E-05 20 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALBOSW_7_1_C7CAHACXX.IND6_noribo_clean.fastq BIL_ALBOSW_7_2_C7CAHACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALB/ALBAligned.sortedByCoord.out.bam JN3_ALB.count G1214_ALB.count ALB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALB/counts/ALB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHN BIL176 Darmor-BZH Cotyledons Lbb-G12-14 bord J9 Rep1 NA 72958879 0,079454346 57969 0,000341288 249 1 0 0,079113058 57720 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHNOSW_2_1_C78LEACXX.IND5_noribo_clean.fastq BIL_AHNOSW_2_2_C78LEACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHN/AHNAligned.sortedByCoord.out.bam JN3_AHN.count G1214_AHN.count AHN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHN/counts/AHN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKT BIL227 Darmor-BZH Cotyledons Lbb-G12-14 bord J9 rep2 NA 83557932 0,043726549 36537 8,97581E-05 75 0 0 0,043636791 36462 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKTOSW_5_1_C7CAHACXX.IND3_noribo_clean.fastq BIL_AKTOSW_5_2_C7CAHACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKT/AKTAligned.sortedByCoord.out.bam JN3_AKT.count G1214_AKT.count AKT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKT/counts/AKT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHM BIL175 Darmor-BZH Cotyledons Lbb-G12-14 centre J9 Rep1 NA 84031302 8,936030766 7509063 0,007738783 6503 9 0 8,928291983 7502560 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHMOSW_1_1_C78LEACXX.IND4_noribo_clean.fastq BIL_AHMOSW_1_2_C78LEACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHM/AHMAligned.sortedByCoord.out.bam JN3_AHM.count G1214_AHM.count AHM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHM/counts/AHM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153284 PRJEB21682 Dutreux et al, 2018 AKS BIL226 Darmor-BZH Cotyledons Lbb-G12-14 centre J9 rep2 NA 82326366 1,909022682 1571629 0,00082841 682 0 0 1,908194272 1570947 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKSOSW_5_1_C7CAHACXX.IND2_noribo_clean.fastq BIL_AKSOSW_5_2_C7CAHACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKS/AKSAligned.sortedByCoord.out.bam JN3_AKS.count G1214_AKS.count AKS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKS/counts/AKS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHH BIL171 Darmor-BZH Cotyledons Lmb-JN2 bord J9 Rep1 NA 84843422 1,261456663 1070263 1,257804052 1067164 7786 2452 0,003652611 3099 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHHOSW_7_1_C78EVACXX.IND27_noribo_clean.fastq BIL_AHHOSW_7_2_C78EVACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHH/AHHAligned.sortedByCoord.out.bam JN3_AHH.count G1214_AHH.count AHH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHH/counts/AHH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKN BIL222 Darmor-BZH Cotyledons Lmb-JN2 bord J9 rep2 NA 89178637 1,722952998 1536506 1,721887721 1535556 8881 2547 0,001065278 950 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKNOSW_3_1_C7CAHACXX.IND23_noribo_clean.fastq BIL_AKNOSW_3_2_C7CAHACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKN/AKNAligned.sortedByCoord.out.bam JN3_AKN.count G1214_AKN.count AKN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKN/counts/AKN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHF BIL169 Darmor-BZH Cotyledons Lmb-JN2 centre J9 Rep1 NA 82110894 9,10121987 7473093 9,095382642 7468300 31327 10501 0,005837228 4793 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHFOSW_6_1_C78EVACXX.IND25_noribo_clean.fastq BIL_AHFOSW_6_2_C78EVACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHF/AHFAligned.sortedByCoord.out.bam JN3_AHF.count G1214_AHF.count AHF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHF/counts/AHF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHG BIL170 Darmor-BZH Cotyledons Lmb-JN2 centre J9 Rep1 NA 87600313 52,04610399 45592550 52,02012349 45569791 26170 7687 0,025980501 22759 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHGOSW_6_1_C78EVACXX.IND8_noribo_clean.fastq BIL_AHGOSW_6_2_C78EVACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHG/AHGAligned.sortedByCoord.out.bam JN3_AHG.count G1214_AHG.count AHG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHG/counts/AHG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 AKM BIL221 Darmor-BZH Cotyledons Lmb-JN2 centre J9 rep2 NA 70587108 57,08844879 40297085 57,05463525 40273217 27178 6501 0,03381354 23868 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKMOSW_2_1_C7CAHACXX.IND22_noribo_clean.fastq BIL_AKMOSW_2_2_C7CAHACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKM/AKMAligned.sortedByCoord.out.bam JN3_AKM.count G1214_AKM.count AKM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKM/counts/AKM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153287 PRJEB21682 Dutreux et al, 2018 / Gay et al, 2020 AHQ BIL178 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 bord J9 Rep1 NA 86136113 0,037998 32730 0,002159373 1860 12 2 0,035838627 30870 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHQOSW_1_1_C7C2PACXX.IND8_noribo_clean.fastq BIL_AHQOSW_1_2_C7C2PACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHQ/AHQAligned.sortedByCoord.out.bam JN3_AHQ.count G1214_AHQ.count AHQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHQ/counts/AHQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALA BIL229 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 bord J9 rep2 NA 69938643 0,050172549 35090 0,003076983 2152 0 0 0,047095566 32938 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALAOSW_6_1_C7CAHACXX.IND5_noribo_clean.fastq BIL_ALAOSW_6_2_C7CAHACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALA/ALAAligned.sortedByCoord.out.bam JN3_ALA.count G1214_ALA.count ALA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALA/counts/ALA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHP BIL177 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J9 Rep1 NA 79734110 2,134785226 1702152 0,525075153 418664 85 39 1,609710073 1283488 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHPOSW_2_1_C78LEACXX.IND6_noribo_clean.fastq BIL_AHPOSW_2_2_C78LEACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHP/AHPAligned.sortedByCoord.out.bam JN3_AHP.count G1214_AHP.count AHP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHP/counts/AHP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKV BIL228 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J9 rep2 NA 89139821 1,228367959 1094965 0,276924496 246850 57 50 0,951443463 848115 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKVOSW_6_1_C7CAHACXX.IND4_noribo_clean.fastq BIL_AKVOSW_6_2_C7CAHACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKV/AKVAligned.sortedByCoord.out.bam JN3_AKV.count G1214_AKV.count AKV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKV/counts/AKV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHL BIL174 Darmor-BZH Cotyledons Lmb-Nz-T4 bord J9 Rep1 NA 81917479 9,975591412 7219316 8,805396709 7213159 24273 0 0,0075161 6157 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHLOSW_1_1_C78LEACXX.IND3_noribo_clean.fastq BIL_AHLOSW_1_2_C78LEACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHL/AHLAligned.sortedByCoord.out.bam JN3_AHL.count G1214_AHL.count AHL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHL/counts/AHL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKR BIL225 Darmor-BZH Cotyledons Lmb-Nz-T4 bord J9 rep2 NA 79741970 1,707936235 1199268 1,503141946 1198635 6658 0 0,00079381 633 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKROSW_4_1_C7CAHACXX.IND1_noribo_clean.fastq BIL_AKROSW_4_2_C7CAHACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKR/AKRAligned.sortedByCoord.out.bam JN3_AKR.count G1214_AKR.count AKR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKR/counts/AKR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHI BIL172 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J9 Rep1 NA 85115777 14,23356565 10943910 12,85103113 10938255 30835 0 0,006643892 5655 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHIOSW_8_1_C78EVACXX.IND1_noribo_clean.fastq BIL_AHIOSW_8_2_C78EVACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHI/AHIAligned.sortedByCoord.out.bam JN3_AHI.count G1214_AHI.count AHI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHI/counts/AHI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHK BIL173 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J9 Rep1 NA 81545551 66,50060283 47901459 58,71711628 47881196 21022 0 0,024848689 20263 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHKOSW_8_1_C78EVACXX.IND2_noribo_clean.fastq BIL_AHKOSW_8_2_C78EVACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHK/AHKAligned.sortedByCoord.out.bam JN3_AHK.count G1214_AHK.count AHK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHK/counts/AHK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153283 PRJEB21682 Dutreux et al, 2018 AKP BIL223 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J9 rep2 NA 89462779 17,1400287 13644708 15,24108702 13635100 37457 0 0,010739662 9608 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKPOSW_3_1_C7CAHACXX.IND25_noribo_clean.fastq BIL_AKPOSW_3_2_C7CAHACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKP/AKPAligned.sortedByCoord.out.bam JN3_AKP.count G1214_AKP.count AKP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKP/counts/AKP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKQ BIL224 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J9 rep2 NA 116640575 56,79176479 58335457 49,98597101 58303924 36763 0 0,027034332 31533 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKQOSW_4_1_C7CAHACXX.IND27_noribo_clean.fastq BIL_AKQOSW_4_2_C7CAHACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKQ/AKQAligned.sortedByCoord.out.bam JN3_AKQ.count G1214_AKQ.count AKQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKQ/counts/AKQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHE BIL168 Darmor-BZH Cotyledons H2O centre J7 Rep1 NA 69993439 5,57195E-05 39 3,57176E-05 25 0 0 2,00019E-05 14 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHEOSW_1_1_C7C2PACXX.IND7_noribo_clean.fastq BIL_AHEOSW_1_2_C7C2PACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHE/AHEAligned.sortedByCoord.out.bam JN3_AHE.count G1214_AHE.count AHE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHE/counts/AHE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKL BIL220 Darmor-BZH Cotyledons H2O centre J7 rep2 NA 88679005 0,008111277 7193 0,008086469 7171 8 0 2,48086E-05 22 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKLOSW_2_1_C7CAHACXX.IND21_noribo_clean.fastq BIL_AKLOSW_2_2_C7CAHACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKL/AKLAligned.sortedByCoord.out.bam JN3_AKL.count G1214_AKL.count AKL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKL/counts/AKL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKI BIL218 Darmor-BZH Cotyledons Lbb-G12-14 centre J7 rep2 NA 83063333 1,683923519 1398723 0,000940246 781 0 0 1,682983273 1397942 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKIOSW_1_1_C7CAHACXX.IND19_noribo_clean.fastq BIL_AKIOSW_1_2_C7CAHACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKI/AKIAligned.sortedByCoord.out.bam JN3_AKI.count G1214_AKI.count AKI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKI/counts/AKI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHC BIL166 Darmor-BZH Cotyledons Lbb-G12-14 centre J7 Rep1 NA 77091306 3,408725492 2627831 0,001530652 1180 0 0 3,40719484 2626651 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHCOSW_3_1_C7BE0ACXX.IND5_noribo_clean.fastq BIL_AHCOSW_3_2_C7BE0ACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHC/AHCAligned.sortedByCoord.out.bam JN3_AHC.count G1214_AHC.count AHC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHC/counts/AHC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153282 PRJEB21682 Dutreux et al, 2018 AHA BIL164 Darmor-BZH Cotyledons Lmb-JN2 centre J7 Rep1 NA 78240411 7,373041535 5768698 7,368517019 5765158 27230 10088 0,004524516 3540 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHAOSW_2_1_C7BE0ACXX.IND3_noribo_clean.fastq BIL_AHAOSW_2_2_C7BE0ACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHA/AHAAligned.sortedByCoord.out.bam JN3_AHA.count G1214_AHA.count AHA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHA/counts/AHA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 AKG BIL216 Darmor-BZH Cotyledons Lmb-JN2 centre J7 rep2 NA 88304930 12,2441114 10812154 12,23620357 10805171 42776 19946 0,007907826 6983 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKGOSW_8_1_C7CAAACXX.IND15_noribo_clean.fastq BIL_AKGOSW_8_2_C7CAAACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKG/AKGAligned.sortedByCoord.out.bam JN3_AKG.count G1214_AKG.count AKG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKG/counts/AKG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 AHD BIL167 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J7 Rep1 NA 66153975 1,361324093 900570 0,429649163 284230 51 29 0,93167493 616340 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHDOSW_3_1_C7BE0ACXX.IND6_noribo_clean.fastq BIL_AHDOSW_3_2_C7BE0ACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHD/AHDAligned.sortedByCoord.out.bam JN3_AHD.count G1214_AHD.count AHD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHD/counts/AHD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKK BIL219 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J7 rep2 NA 101013881 0,764557299 772309 0,17342963 175188 68 28 0,591127669 597121 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKKOSW_1_1_C7CAHACXX.IND20_noribo_clean.fastq BIL_AKKOSW_1_2_C7CAHACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKK/AKKAligned.sortedByCoord.out.bam JN3_AKK.count G1214_AKK.count AKK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKK/counts/AKK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHB BIL165 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J7 Rep1 NA 80187093 4,161429072 3013458 3,756025923 3011848 14916 2 0,002007804 1610 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHBOSW_2_1_C7BE0ACXX.IND4_noribo_clean.fastq BIL_AHBOSW_2_2_C7BE0ACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHB/AHBAligned.sortedByCoord.out.bam JN3_AHB.count G1214_AHB.count AHB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHB/counts/AHB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKH BIL217 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J7 rep2 NA 69189250 9,088783301 5683680 8,208770871 5679587 27134 7 0,005915659 4093 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKHOSW_8_1_C7CAAACXX.IND18_noribo_clean.fastq BIL_AKHOSW_8_2_C7CAAACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKH/AKHAligned.sortedByCoord.out.bam JN3_AKH.count G1214_AKH.count AKH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKH/counts/AKH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKF BIL215 Darmor-BZH Cotyledons H2O centre J5 rep2 NA 71268443 0,000538808 384 0,000182409 130 0 0 0,000356399 254 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKFOSW_7_1_C7CAAACXX.IND14_noribo_clean.fastq BIL_AKFOSW_7_2_C7CAAACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKF/AKFAligned.sortedByCoord.out.bam JN3_AKF.count G1214_AKF.count AKF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKF/counts/AKF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGV BIL163 Darmor-BZH Cotyledons H2O centre J5 Rep1 NA 74601392 0,000719826 537 0,00055629 415 0 3 0,000163536 122 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGVOSW_7_1_C7BFEACXX.IND2_noribo_clean.fastq BIL_AGVOSW_7_2_C7BFEACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGV/AGVAligned.sortedByCoord.out.bam JN3_AGV.count G1214_AGV.count AGV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGV/counts/AGV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGS BIL161 Darmor-BZH Cotyledons Lbb-G12-14 centre J5 Rep1 NA 73659893 2,370079468 1745798 0,001690201 1245 0 0 2,368389267 1744553 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGSOSW_6_1_C7BFEACXX.IND27_noribo_clean.fastq BIL_AGSOSW_6_2_C7BFEACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGS/AGSAligned.sortedByCoord.out.bam JN3_AGS.count G1214_AGS.count AGS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGS/counts/AGS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKD BIL213 Darmor-BZH Cotyledons Lbb-G12-14 centre J5 rep2 NA 77966320 1,299013471 1012793 0,001147932 895 0 0 1,29786554 1011898 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKDOSW_6_1_C7CAAACXX.IND12_noribo_clean.fastq BIL_AKDOSW_6_2_C7CAAACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKD/AKDAligned.sortedByCoord.out.bam JN3_AKD.count G1214_AKD.count AKD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKD/counts/AKD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGQ BIL159 Darmor-BZH Cotyledons Lmb-JN2 centre J5 Rep1 NA 74849258 1,354327387 1013704 1,353811684 1013318 2157 1033 0,000515703 386 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGQOSW_5_1_C7BFEACXX.IND23_noribo_clean.fastq BIL_AGQOSW_5_2_C7BFEACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGQ/AGQAligned.sortedByCoord.out.bam JN3_AGQ.count G1214_AGQ.count AGQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGQ/counts/AGQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 AKB BIL211 Darmor-BZH Cotyledons Lmb-JN2 centre J5 rep2 NA 82766974 1,654325311 1369235 1,653457815 1368517 3014 1826 0,000867496 718 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKBOSW_5_1_C7CAAACXX.IND10_noribo_clean.fastq BIL_AKBOSW_5_2_C7CAAACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKB/AKBAligned.sortedByCoord.out.bam JN3_AKB.count G1214_AKB.count AKB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKB/counts/AKB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153286 PRJEB21682 Dutreux et al, 2018 / Gay et al, 2020 AGT BIL162 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J5 Rep1 NA 86017449 0,969082447 833580 0,346588981 298127 50 23 0,622493466 535453 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGTOSW_7_1_C7BFEACXX.IND1_noribo_clean.fastq BIL_AGTOSW_7_2_C7BFEACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGT/AGTAligned.sortedByCoord.out.bam JN3_AGT.count G1214_AGT.count AGT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGT/counts/AGT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKE BIL214 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J5 rep2 NA 83547284 1,086387201 907647 0,333775063 278860 25 10 0,752612138 628787 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKEOSW_7_1_C7CAAACXX.IND13_noribo_clean.fastq BIL_AKEOSW_7_2_C7CAAACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKE/AKEAligned.sortedByCoord.out.bam JN3_AKE.count G1214_AKE.count AKE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKE/counts/AKE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGR BIL160 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J5 Rep1 NA 73115906 1,329661428 854352 1,167427235 853575 1551 0 0,001062696 777 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGROSW_6_1_C7BFEACXX.IND25_noribo_clean.fastq BIL_AGROSW_6_2_C7BFEACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGR/AGRAligned.sortedByCoord.out.bam JN3_AGR.count G1214_AGR.count AGR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGR/counts/AGR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKC BIL212 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J5 rep2 NA 81540204 0,987908983 706710 0,865971589 706115 1741 0 0,000729701 595 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKCOSW_6_1_C7CAAACXX.IND11_noribo_clean.fastq BIL_AKCOSW_6_2_C7CAAACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKC/AKCAligned.sortedByCoord.out.bam JN3_AKC.count G1214_AKC.count AKC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKC/counts/AKC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGK BIL154 Darmor-BZH Cotyledons H2O centre J2 Rep1 NA 75177902 0,001871561 1407 0,001367423 1028 0 0 0,000504138 379 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGKOSW_8_1_C772BACXX.IND18_noribo_clean.fastq BIL_AGKOSW_8_2_C772BACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGK/AGKAligned.sortedByCoord.out.bam JN3_AGK.count G1214_AGK.count AGK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGK/counts/AGK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AKA BIL210 Darmor-BZH Cotyledons H2O centre J2 rep2 NA 71598728 0,00086035 616 0,000832417 596 1 0 2,79335E-05 20 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AKAOSW_5_1_C7CAAACXX.IND9_noribo_clean.fastq BIL_AKAOSW_5_2_C7CAAACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AKA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AKA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKA/AKAAligned.sortedByCoord.out.bam JN3_AKA.count G1214_AKA.count AKA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AKA/counts/AKA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AKA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIT BIL208 Darmor-BZH Cotyledons Lbb-G12-14 centre J2 rep2 NA 74498131 2,072221114 1543766 0,001922196 1432 0 0 2,070298918 1542334 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AITOSW_4_1_C7CAAACXX.IND7_noribo_clean.fastq BIL_AITOSW_4_2_C7CAAACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIT/AITAligned.sortedByCoord.out.bam JN3_AIT.count G1214_AIT.count AIT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIT/counts/AIT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGM BIL156 Darmor-BZH Cotyledons Lbb-G12-14 centre J2 Rep1 NA 80969628 3,546366793 2871480 0,003328409 2695 0 0 3,543038385 2868785 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGMOSW_4_1_C7BFEACXX.IND20_noribo_clean.fastq BIL_AGMOSW_4_2_C7BFEACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGM/AGMAligned.sortedByCoord.out.bam JN3_AGM.count G1214_AGM.count AGM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGM/counts/AGM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGP BIL158 Darmor-BZH Cotyledons Lmb-JN2 centre J2 Rep1 NA 74105833 3,096298776 2294538 3,095362277 2293844 2 4 0,000936498 694 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGPOSW_5_1_C7BFEACXX.IND22_noribo_clean.fastq BIL_AGPOSW_5_2_C7BFEACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGP/AGPAligned.sortedByCoord.out.bam JN3_AGP.count G1214_AGP.count AGP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGP/counts/AGP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 AIR BIL206 Darmor-BZH Cotyledons Lmb-JN2 centre J2 rep2 NA 74260743 2,064983379 1533472 2,063904747 1532671 0 0 0,001078632 801 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIROSW_3_1_C7CAAACXX.IND5_noribo_clean.fastq BIL_AIROSW_3_2_C7CAAACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIR/AIRAligned.sortedByCoord.out.bam JN3_AIR.count G1214_AIR.count AIR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIR/counts/AIR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 AGN BIL157 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J2 Rep1 NA 79627867 3,01062692 2397298 1,490498295 1186852 2 0 1,520128625 1210446 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGNOSW_4_1_C7BFEACXX.IND21_noribo_clean.fastq BIL_AGNOSW_4_2_C7BFEACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGN/AGNAligned.sortedByCoord.out.bam JN3_AGN.count G1214_AGN.count AGN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGN/counts/AGN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIV BIL209 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J2 rep2 NA 81615893 1,747260181 1426042 0,74974368 611910 0 0 0,997516501 814132 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIVOSW_4_1_C7CAAACXX.IND8_noribo_clean.fastq BIL_AIVOSW_4_2_C7CAAACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIV/AIVAligned.sortedByCoord.out.bam JN3_AIV.count G1214_AIV.count AIV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIV/counts/AIV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGL BIL155 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J2 Rep1 NA 80495174 3,851486798 2765991 3,435207184 2765176 4 0 0,001012483 815 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGLOSW_8_1_C772BACXX.IND19_noribo_clean.fastq BIL_AGLOSW_8_2_C772BACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGL/AGLAligned.sortedByCoord.out.bam JN3_AGL.count G1214_AGL.count AGL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGL/counts/AGL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIS BIL207 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J2 rep2 NA 94922159 2,64211226 2253296 2,372498712 2252027 1 0 0,001336885 1269 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AISOSW_3_1_C7CAAACXX.IND6_noribo_clean.fastq BIL_AISOSW_3_2_C7CAAACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIS/AISAligned.sortedByCoord.out.bam JN3_AIS.count G1214_AIS.count AIS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIS/counts/AIS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQH BIL202 Darmor-BZH Cotyledons Lbb-G12-14 cotyledon J19 Rep1 NA 85823976 71,13995278 61055136 0,269089141 230943 0 0 70,87086364 60824193 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQHOSW_1_1_C78PRACXX.IND10_noribo_clean.fastq BIL_AQHOSW_1_2_C78PRACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQH/AQHAligned.sortedByCoord.out.bam JN3_AQH.count G1214_AQH.count AQH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQH/counts/AQH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQF BIL200 Darmor-BZH Cotyledons Lmb-JN2 cotyledon J19 Rep1 NA 69381945 64,44524004 44713361 64,32832346 44632242 11 12 0,116916584 81119 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQFOSW_8_1_C797YACXX.IND8_noribo_clean.fastq BIL_AQFOSW_8_2_C797YACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQF/AQFAligned.sortedByCoord.out.bam JN3_AQF.count G1214_AQF.count AQF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQF/counts/AQF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIN BIL203 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 cotyledon J19 Rep1 NA 78414654 59,06218753 46313410 0,871156047 683114 3 0 58,19103149 45630296 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AINOSW_1_1_C7C89ACXX.IND4_noribo_clean.fastq BIL_AINOSW_1_2_C7C89ACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIN/AINAligned.sortedByCoord.out.bam JN3_AIN.count G1214_AIN.count AIN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIN/counts/AIN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQG BIL201 Darmor-BZH Cotyledons Lmb-Nz-T4 cotyledon J19 Rep1 NA 81691312 96,12864095 66096239 80,83691568 66036737 60 0 0,072837611 59502 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQGOSW_1_1_C78PRACXX.IND9_noribo_clean.fastq BIL_AQGOSW_1_2_C78PRACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQG/AQGAligned.sortedByCoord.out.bam JN3_AQG.count G1214_AQG.count AQG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQG/counts/AQG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMH BIL255 Darmor-BZH Cotyledons H2O cotyledon J17 rep2 NA 75287266 0,008940423 6731 0,00881424 6636 0 0 0,000126183 95 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMHOSW_2_1_C7CABACXX.IND9_noribo_clean.fastq BIL_AMHOSW_2_2_C7CABACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMH/AMHAligned.sortedByCoord.out.bam JN3_AMH.count G1214_AMH.count AMH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMH/counts/AMH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMD BIL251 Darmor-BZH Cotyledons Lmb-JN2 cotyledon J17 rep2 NA 83908826 57,00980371 47836257 56,98297698 47813747 11683 3464 0,026826737 22510 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMDOSW_8_1_C7CA4ACXX.IND5_noribo_clean.fastq BIL_AMDOSW_8_2_C7CA4ACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMD/AMDAligned.sortedByCoord.out.bam JN3_AMD.count G1214_AMD.count AMD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMD/counts/AMD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMG BIL254 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 cotyledon J17 rep2 NA 126040179 3,40576476 4292632 0,151159735 190522 29 14 3,254605026 4102110 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMGOSW_1_1_C7CABACXX.IND8_noribo_clean.fastq BIL_AMGOSW_1_2_C7CABACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMG/AMGAligned.sortedByCoord.out.bam JN3_AMG.count G1214_AMG.count AMG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMG/counts/AMG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMF BIL253 Darmor-BZH Cotyledons Lbb-G12-14 cotyledon J17 rep2 NA 72612428 6,615032898 4803336 0,029887446 21702 1 0 6,585145452 4781634 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMFOSW_1_1_C7CABACXX.IND7_noribo_clean.fastq BIL_AMFOSW_1_2_C7CABACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMF/AMFAligned.sortedByCoord.out.bam JN3_AMF.count G1214_AMF.count AMF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMF/counts/AMF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AME BIL252 Darmor-BZH Cotyledons Lmb-Nz-T4 cotyledon J17 rep2 NA 76287212 39,53812338 26120945 34,2208744 26106151 14529 0 0,019392503 14794 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMEOSW_8_1_C7CA4ACXX.IND6_noribo_clean.fastq BIL_AMEOSW_8_2_C7CA4ACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AME " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AME /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AME JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AME/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AME/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AME/AMEAligned.sortedByCoord.out.bam JN3_AME.count G1214_AME.count AME_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AME/counts/AME_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AME/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIM BIL199 Darmor-BZH Cotyledons H2O bord J15 Rep1 NA 81926545 0,006511931 5335 0,006421606 5261 0 0 9,03248E-05 74 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIMOSW_1_1_C7CAAACXX.IND2_noribo_clean.fastq BIL_AIMOSW_1_2_C7CAAACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIM/AIMAligned.sortedByCoord.out.bam JN3_AIM.count G1214_AIM.count AIM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIM/counts/AIM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMC BIL250 Darmor-BZH Cotyledons H2O bord J15 rep2 NA 100983898 0,009924354 10022 0,009651044 9746 24 2 0,000273311 276 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMCOSW_7_1_C7CA4ACXX.IND4_noribo_clean.fastq BIL_AMCOSW_7_2_C7CA4ACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMC/AMCAligned.sortedByCoord.out.bam JN3_AMC.count G1214_AMC.count AMC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMC/counts/AMC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIL BIL198 Darmor-BZH Cotyledons H2O centre J15 Rep1 NA 77062998 0,000663094 511 0,000506079 390 0 0 0,000157014 121 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AILOSW_1_1_C7CAAACXX.IND1_noribo_clean.fastq BIL_AILOSW_1_2_C7CAAACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIL/AILAligned.sortedByCoord.out.bam JN3_AIL.count G1214_AIL.count AIL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIL/counts/AIL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMB BIL249 Darmor-BZH Cotyledons H2O centre J15 rep2 NA 82784933 0,001012261 838 0,000947032 784 1 0 6,52293E-05 54 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMBOSW_7_1_C7CA4ACXX.IND3_noribo_clean.fastq BIL_AMBOSW_7_2_C7CA4ACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMB/AMBAligned.sortedByCoord.out.bam JN3_AMB.count G1214_AMB.count AMB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMB/counts/AMB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQD BIL195 Darmor-BZH Cotyledons Lbb-G12-14 bord J15 Rep1 NA 98039371 21,53953436 21117224 0,03153121 30913 0 0 21,50800315 21086311 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQDOSW_8_1_C797YACXX.IND7_noribo_clean.fastq BIL_AQDOSW_8_2_C797YACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQD/AQDAligned.sortedByCoord.out.bam JN3_AQD.count G1214_AQD.count AQD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQD/counts/AQD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALT BIL246 Darmor-BZH Cotyledons Lbb-G12-14 bord J15 rep2 NA 113067039 7,444962807 8417799 0,020695687 23400 0 1 7,42426712 8394399 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALTOSW_5_1_C7CA4ACXX.IND25_noribo_clean.fastq BIL_ALTOSW_5_2_C7CA4ACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALT/ALTAligned.sortedByCoord.out.bam JN3_ALT.count G1214_ALT.count ALT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALT/counts/ALT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQC BIL194 Darmor-BZH Cotyledons Lbb-G12-14 centre J15 Rep1 NA 90252741 73,3152869 66169056 0,062600869 56499 3 0 73,25268603 66112557 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQCOSW_5_1_C7C8BACXX.IND13_noribo_clean.fastq BIL_AQCOSW_5_2_C7C8BACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQC/AQCAligned.sortedByCoord.out.bam JN3_AQC.count G1214_AQC.count AQC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQC/counts/AQC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALS BIL245 Darmor-BZH Cotyledons Lbb-G12-14 centre J15 rep2 NA 88374962 16,60023118 14670448 0,694822364 614049 9 2 15,90540882 14056399 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALSOSW_5_1_C7CA4ACXX.IND23_noribo_clean.fastq BIL_ALSOSW_5_2_C7CA4ACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALS/ALSAligned.sortedByCoord.out.bam JN3_ALS.count G1214_ALS.count ALS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALS/counts/ALS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AII BIL191 Darmor-BZH Cotyledons Lmb-JN2 bord J15 Rep1 NA 70325058 53,39100182 37547253 53,36002851 37525471 16306 4450 0,030973313 21782 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIIOSW_3_1_C7CAFACXX.IND22_noribo_clean.fastq BIL_AIIOSW_3_2_C7CAFACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AII " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AII /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AII JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AII/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AII/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AII/AIIAligned.sortedByCoord.out.bam JN3_AII.count G1214_AII.count AII_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AII/counts/AII_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AII/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALP BIL242 Darmor-BZH Cotyledons Lmb-JN2 bord J15 rep2 NA 113930692 47,70182472 54347019 47,67772586 54319563 33657 9324 0,024098862 27456 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALPOSW_3_1_C7CA4ACXX.IND20_noribo_clean.fastq BIL_ALPOSW_3_2_C7CA4ACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALP/ALPAligned.sortedByCoord.out.bam JN3_ALP.count G1214_ALP.count ALP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALP/counts/ALP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIH BIL190 Darmor-BZH Cotyledons Lmb-JN2 centre J15 Rep1 NA 86504338 80,98820085 70058307 80,9499149 70025188 169 41 0,038285941 33119 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIHOSW_2_1_C7CAFACXX.IND21_noribo_clean.fastq BIL_AIHOSW_2_2_C7CAFACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIH/AIHAligned.sortedByCoord.out.bam JN3_AIH.count G1214_AIH.count AIH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIH/counts/AIH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 ALN BIL241 Darmor-BZH Cotyledons Lmb-JN2 centre J15 rep2 NA 55850007 82,69600933 46185727 82,65387505 46162195 52 9 0,042134283 23532 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALNOSW_3_1_C7CA4ACXX.IND19_noribo_clean.fastq BIL_ALNOSW_3_2_C7CA4ACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALN/ALNAligned.sortedByCoord.out.bam JN3_ALN.count G1214_ALN.count ALN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALN/counts/ALN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 AIK BIL197 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 bord J15 Rep1 NA 83108461 4,277862876 3555266 0,021305893 17707 1 4 4,256556983 3537559 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIKOSW_3_1_C7CAFACXX.IND23_noribo_clean.fastq BIL_AIKOSW_3_2_C7CAFACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIK/AIKAligned.sortedByCoord.out.bam JN3_AIK.count G1214_AIK.count AIK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIK/counts/AIK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMA BIL248 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 bord J15 rep2 NA 93042753 1,104234308 1027410 0,007087065 6594 32 7 1,097147244 1020816 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMAOSW_6_1_C7CA4ACXX.IND2_noribo_clean.fastq BIL_AMAOSW_6_2_C7CA4ACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMA/AMAAligned.sortedByCoord.out.bam JN3_AMA.count G1214_AMA.count AMA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AMA/counts/AMA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQE BIL196 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J15 Rep1 NA 64653623 36,48682921 23590057 3,850212694 2489302 90 31 32,63661651 21100755 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQEOSW_2_1_C797YACXX.IND14_noribo_clean.fastq BIL_AQEOSW_2_2_C797YACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQE/AQEAligned.sortedByCoord.out.bam JN3_AQE.count G1214_AQE.count AQE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQE/counts/AQE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALV BIL247 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J15 rep2 NA 88953102 6,161258997 5480631 0,869969661 773865 180 77 5,291289336 4706766 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALVOSW_6_1_C7CA4ACXX.IND1_noribo_clean.fastq BIL_ALVOSW_6_2_C7CA4ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALV/ALVAligned.sortedByCoord.out.bam JN3_ALV.count G1214_ALV.count ALV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALV/counts/ALV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALR BIL244 Darmor-BZH Cotyledons Lmb-Nz-T4 bord J15 rep2 NA 81413911 40,84012252 29091249 35,71983171 29080912 25863 0 0,012696847 10337 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALROSW_4_1_C7CA4ACXX.IND22_noribo_clean.fastq BIL_ALROSW_4_2_C7CA4ACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALR/ALRAligned.sortedByCoord.out.bam JN3_ALR.count G1214_ALR.count ALR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALR/counts/ALR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQA BIL192 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J15 Rep1 NA 67075155 96,73544549 55755223 83,09786388 55738021 87 0 0,025645859 17202 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQAOSW_4_1_C7C8BACXX.IND11_noribo_clean.fastq BIL_AQAOSW_4_2_C7C8BACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQA/AQAAligned.sortedByCoord.out.bam JN3_AQA.count G1214_AQA.count AQA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQA/counts/AQA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALQ BIL243 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J15 rep2 NA 76458083 95,23669983 62677567 81,94969654 62657167 334 0 0,026681286 20400 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALQOSW_4_1_C7CA4ACXX.IND21_noribo_clean.fastq BIL_ALQOSW_4_2_C7CA4ACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALQ/ALQAligned.sortedByCoord.out.bam JN3_ALQ.count G1214_ALQ.count ALQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALQ/counts/ALQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQB BIL193 Darmor-BZH Cotyledons Lmb-Nz-T4 bord J15 Rep1 NA 76829954 65,64693375 50436509 65,59004057 50392798 9973 0 0,056893175 43711 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQBOSW_5_1_C7C8BACXX.IND12_noribo_clean.fastq BIL_AQBOSW_5_2_C7C8BACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQB/AQBAligned.sortedByCoord.out.bam JN3_AQB.count G1214_AQB.count AQB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AQB/counts/AQB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIG BIL189 Darmor-BZH Cotyledons H2O bord J12 Rep1 NA 80599301 0,077103646 62145 0,077045333 62098 0 0 5,83132E-05 47 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIGOSW_2_1_C7CAFACXX.IND20_noribo_clean.fastq BIL_AIGOSW_2_2_C7CAFACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIG/AIGAligned.sortedByCoord.out.bam JN3_AIG.count G1214_AIG.count AIG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIG/counts/AIG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALM BIL240 Darmor-BZH Cotyledons H2O bord J12 rep2 NA 70716789 0,001713879 1212 0,001576712 1115 0 0 0,000137167 97 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALMOSW_8_1_C7C9DACXX.IND18_noribo_clean.fastq BIL_ALMOSW_8_2_C7C9DACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALM/ALMAligned.sortedByCoord.out.bam JN3_ALM.count G1214_ALM.count ALM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALM/counts/ALM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIF BIL188 Darmor-BZH Cotyledons H2O centre J12 Rep1 NA 68945296 0,001515694 1045 0,000934074 644 0 0 0,000581621 401 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIFOSW_1_1_C7CAFACXX.IND19_noribo_clean.fastq BIL_AIFOSW_1_2_C7CAFACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIF/AIFAligned.sortedByCoord.out.bam JN3_AIF.count G1214_AIF.count AIF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIF/counts/AIF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALL BIL239 Darmor-BZH Cotyledons H2O centre J12 rep2 NA 74036963 0,023901575 17696 0,023877262 17678 48 1 2,43122E-05 18 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALLOSW_8_1_C7C9DACXX.IND16_noribo_clean.fastq BIL_ALLOSW_8_2_C7C9DACXX.IND16_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALL/ALLAligned.sortedByCoord.out.bam JN3_ALL.count G1214_ALL.count ALL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALL/counts/ALL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIC BIL185 Darmor-BZH Cotyledons Lbb-G12-14 bord J12 Rep1 NA 98336283 6,621450192 6511288 0,010185457 10016 0 0 6,611264735 6501272 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AICOSW_8_1_C7CAKACXX.IND15_noribo_clean.fastq BIL_AICOSW_8_2_C7CAKACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIC/AICAligned.sortedByCoord.out.bam JN3_AIC.count G1214_AIC.count AIC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIC/counts/AIC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALH BIL236 Darmor-BZH Cotyledons Lbb-G12-14 bord J12 rep2 NA 79305185 1,096041829 869218 0,007334955 5817 3 1 1,088706873 863401 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALHOSW_6_1_C7C9DACXX.IND13_noribo_clean.fastq BIL_ALHOSW_6_2_C7C9DACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALH/ALHAligned.sortedByCoord.out.bam JN3_ALH.count G1214_ALH.count ALH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALH/counts/ALH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIB BIL184 Darmor-BZH Cotyledons Lbb-G12-14 centre J12 Rep1 NA 79246991 50,68136783 40163459 0,049588003 39297 9 6 50,63177982 40124162 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIBOSW_4_1_C7C2PACXX.IND14_noribo_clean.fastq BIL_AIBOSW_4_2_C7C2PACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIB/AIBAligned.sortedByCoord.out.bam JN3_AIB.count G1214_AIB.count AIB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIB/counts/AIB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALG BIL235 Darmor-BZH Cotyledons Lbb-G12-14 centre J12 rep2 NA 73087052 8,101813985 5921377 0,005813615 4249 0 0 8,09600037 5917128 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALGOSW_6_1_C7C9DACXX.IND12_noribo_clean.fastq BIL_ALGOSW_6_2_C7C9DACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALG/ALGAligned.sortedByCoord.out.bam JN3_ALG.count G1214_ALG.count ALG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALG/counts/ALG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHT BIL181 Darmor-BZH Cotyledons Lmb-JN2 bord J12 Rep1 NA 75893136 20,95296998 15901866 20,93950894 15891650 24602 6073 0,013461033 10216 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHTOSW_3_1_C7C2PACXX.IND11_noribo_clean.fastq BIL_AHTOSW_3_2_C7C2PACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHT/AHTAligned.sortedByCoord.out.bam JN3_AHT.count G1214_AHT.count AHT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHT/counts/AHT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALD BIL232 Darmor-BZH Cotyledons Lmb-JN2 bord J12 rep2 NA 92142518 24,94777058 22987504 24,93122882 22972262 24672 7981 0,016541766 15242 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALDOSW_4_1_C7C9DACXX.IND9_noribo_clean.fastq BIL_ALDOSW_4_2_C7C9DACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALD/ALDAligned.sortedByCoord.out.bam JN3_ALD.count G1214_ALD.count ALD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALD/counts/ALD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHS BIL180 Darmor-BZH Cotyledons Lmb-JN2 centre J12 Rep1 NA 71671634 81,08137733 58112348 81,04387435 58085469 584 137 0,037502982 26879 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHSOSW_2_1_C7C2PACXX.IND10_noribo_clean.fastq BIL_AHSOSW_2_2_C7C2PACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHS/AHSAligned.sortedByCoord.out.bam JN3_AHS.count G1214_AHS.count AHS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHS/counts/AHS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 ALC BIL231 Darmor-BZH Cotyledons Lmb-JN2 centre J12 rep2 NA 69422414 81,71867374 56731076 81,68158918 56705331 285 67 0,037084565 25745 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALCOSW_4_1_C7C9DACXX.IND7_noribo_clean.fastq BIL_ALCOSW_4_2_C7C9DACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALC/ALCAligned.sortedByCoord.out.bam JN3_ALC.count G1214_ALC.count ALC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALC/counts/ALC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA6086549 PRJEB34899 H Leontovy?ová et al, ?2020 / Gay et al, 2020 AIE BIL187 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 bord J12 Rep1 NA 84093144 0,822643758 691787 0,003773197 3173 1 0 0,818870561 688614 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIEOSW_1_1_C7CAFACXX.IND18_noribo_clean.fastq BIL_AIEOSW_1_2_C7CAFACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIE/AIEAligned.sortedByCoord.out.bam JN3_AIE.count G1214_AIE.count AIE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIE/counts/AIE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALK BIL238 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 bord J12 rep2 NA 57896545 0,17886905 103559 0,004387136 2540 0 0 0,174481914 101019 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALKOSW_7_1_C7C9DACXX.IND15_noribo_clean.fastq BIL_ALKOSW_7_2_C7C9DACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALK/ALKAligned.sortedByCoord.out.bam JN3_ALK.count G1214_ALK.count ALK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALK/counts/ALK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AID BIL186 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J12 Rep1 NA 94187711 6,394945727 6023253 1,060904856 999242 174 64 5,334040871 5024011 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIDOSW_8_1_C7CAKACXX.IND16_noribo_clean.fastq BIL_AIDOSW_8_2_C7CAKACXX.IND16_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AID " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AID /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AID JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AID/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AID/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AID/AIDAligned.sortedByCoord.out.bam JN3_AID.count G1214_AID.count AID_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AID/counts/AID_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AID/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALI BIL237 Darmor-BZH Cotyledons Lmb-JN2, Lbb-G12-14 centre J12 rep2 NA 85763660 1,603633754 1375335 0,377281007 323570 155 98 1,226352747 1051765 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALIOSW_7_1_C7C9DACXX.IND14_noribo_clean.fastq BIL_ALIOSW_7_2_C7C9DACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALI/ALIAligned.sortedByCoord.out.bam JN3_ALI.count G1214_ALI.count ALI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALI/counts/ALI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIA BIL183 Darmor-BZH Cotyledons Lmb-Nz-T4 bord J12 Rep1 NA 77463159 12,89126874 8781617 11,31356004 8763841 18911 5179 0,022947683 17776 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIAOSW_4_1_C7C2PACXX.IND13_noribo_clean.fastq BIL_AIAOSW_4_2_C7C2PACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIA/AIAAligned.sortedByCoord.out.bam JN3_AIA.count G1214_AIA.count AIA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIA/counts/AIA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ALF BIL234 Darmor-BZH Cotyledons Lmb-Nz-T4 bord J12 rep2 NA 72238496 20,25222535 12815020 17,73105714 12808649 18700 1467 0,008819397 6371 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALFOSW_5_1_C7C9DACXX.IND11_noribo_clean.fastq BIL_ALFOSW_5_2_C7C9DACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALF/ALFAligned.sortedByCoord.out.bam JN3_ALF.count G1214_ALF.count ALF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALF/counts/ALF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AHV BIL182 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J12 Rep1 NA 87176915 94,06928084 69940716 80,19426014 69910882 134 34 0,034222363 29834 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AHVOSW_3_1_C7C2PACXX.IND12_noribo_clean.fastq BIL_AHVOSW_3_2_C7C2PACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AHV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AHV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHV/AHVAligned.sortedByCoord.out.bam JN3_AHV.count G1214_AHV.count AHV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AHV/counts/AHV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AHV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153285 PRJEB21682 Dutreux et al, 2018 ALE BIL233 Darmor-BZH Cotyledons Lmb-Nz-T4 centre J12 rep2 NA 77610696 90,48341868 60506745 77,93608628 60486739 1197 2 0,025777375 20006 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ALEOSW_5_1_C7C9DACXX.IND10_noribo_clean.fastq BIL_ALEOSW_5_2_C7C9DACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ALE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ALE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALE/ALEAligned.sortedByCoord.out.bam JN3_ALE.count G1214_ALE.count ALE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ALE/counts/ALE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ALE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIQ BIL205 Darmor-BZH Cotyledons Rien centre J0 rep2 NA 97530012 4,7165E-05 46 1,94812E-05 19 0 0 2,76838E-05 27 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIQOSW_2_1_C7CAAACXX.IND4_noribo_clean.fastq BIL_AIQOSW_2_2_C7CAAACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIQ/AIQAligned.sortedByCoord.out.bam JN3_AIQ.count G1214_AIQ.count AIQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIQ/counts/AIQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AIP BIL204 Darmor-BZH Cotyledons Rien centre J0 rep2 NA 85754834 3,84818E-05 33 3,0319E-05 26 0 0 8,16281E-06 7 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AIPOSW_2_1_C7CAAACXX.IND3_noribo_clean.fastq BIL_AIPOSW_2_2_C7CAAACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AIP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AIP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIP/AIPAligned.sortedByCoord.out.bam JN3_AIP.count G1214_AIP.count AIP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AIP/counts/AIP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AIP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGH BIL152 Darmor-BZH Cotyledons Rien centre J0 Rep1 NA 78399073 5,22965E-05 41 4,46434E-05 35 0 0 7,65315E-06 6 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGHOSW_7_1_C772BACXX.IND14_noribo_clean.fastq BIL_AGHOSW_7_2_C772BACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGH/AGHAligned.sortedByCoord.out.bam JN3_AGH.count G1214_AGH.count AGH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGH/counts/AGH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGI BIL153 Darmor-BZH Cotyledons Rien centre J0 Rep1 NA 81276007 0,001060584 862 0,000995374 809 0 0 6,52099E-05 53 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGIOSW_7_1_C772BACXX.IND15_noribo_clean.fastq BIL_AGIOSW_7_2_C772BACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGI/AGIAligned.sortedByCoord.out.bam JN3_AGI.count G1214_AGI.count AGI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGI/counts/AGI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGG BIL151 Bristol Petiole Plante saine inf J14 rep2 NA 80925221 0,012895856 10436 0,010693823 8654 0 0 0,002202033 1782 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGGOSW_6_1_C772BACXX.IND13_noribo_clean.fastq BIL_AGGOSW_6_2_C772BACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGG/AGGAligned.sortedByCoord.out.bam JN3_AGG.count G1214_AGG.count AGG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGG/counts/AGG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADE BIL074 Bristol Petiole Rien tout J0 Rep1 NA 62364864 0,010980542 6848 0,008607411 5368 0 0 0,002373131 1480 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADEOSW_5_1_C78ECACXX.IND1_noribo_clean.fastq BIL_ADEOSW_5_2_C78ECACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADE/ADEAligned.sortedByCoord.out.bam JN3_ADE.count G1214_ADE.count ADE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADE/counts/ADE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARR BIL313 Bristol Petiole Lmb-JN2, Lbb-G12-14 restant J7 Rep1 NA 78790786 0,002912777 2295 0,001270453 1001 0 0 0,001642324 1294 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARROSW_4_1_C797YACXX.IND20_noribo_clean.fastq BIL_ARROSW_4_2_C797YACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARR.count G1214_ARR.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGF BIL150 Bristol Petiole Plante saine sup J14 rep2 NA 86496506 0,002246334 1943 0,002133034 1845 0 0 0,000113299 98 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGFOSW_6_1_C772BACXX.IND12_noribo_clean.fastq BIL_AGFOSW_6_2_C772BACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGFAGFAligned.sortedByCoord.out.bam JN3_AGF.count G1214_AGF.count AGF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGF/counts/AGF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADD BIL073 darmorBZH Petiole Rien tout J0 Rep1 NA 98402427 0,004054778 3990 0,003899294 3837 0 0 0,000155484 153 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADDOSW_4_1_C78ECACXX.IND25_noribo_clean.fastq BIL_ADDOSW_4_2_C78ECACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADDADDAligned.sortedByCoord.out.bam JN3_ADD.count G1214_ADD.count ADD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADD/counts/ADD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADS BIL086 Bristol Petiole Lmb-JN2 inf J7 Rep1 NA 94182847 2,401408613 2261715 2,399683246 2260090 4010 1195 0,001725367 1625 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADSOSW_4_1_C78WNACXX.IND13_noribo_clean.fastq BIL_ADSOSW_4_2_C78WNACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADSADSAligned.sortedByCoord.out.bam JN3_ADS.count G1214_ADS.count ADS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADS/counts/ADS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APR BIL113 Bristol Petiole Plante saine total attaché J14 Rep1 NA 91346226 0,005865595 5358 0,001771283 1618 0 0 0,004094313 3740 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APROSW_3_1_C7C8BACXX.IND9_noribo_clean.fastq BIL_APROSW_3_2_C7C8BACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APRAPRAligned.sortedByCoord.out.bam JN3_APR.count G1214_APR.count APR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APR/counts/APR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEM BIL116 Bristol Petiole Rien tout J0 rep2 NA 89095656 0,060993995 54343 0,060880634 54242 5 0 0,000113361 101 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEMOSW_3_1_C78DVACXX.IND3_noribo_clean.fastq BIL_AEMOSW_3_2_C78DVACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEMAEMAligned.sortedByCoord.out.bam JN3_AEM.count G1214_AEM.count AEM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEM/counts/AEM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APS BIL114 Bristol Petiole Plante saine total détaché J14 Rep1 NA 82597738 0,025434111 21008 0,016580357 13695 0 0 0,008853753 7313 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APSOSW_4_1_C7C8BACXX.IND10_noribo_clean.fastq BIL_APSOSW_4_2_C7C8BACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APSAPSAligned.sortedByCoord.out.bam JN3_APS.count G1214_APS.count APS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APS/counts/APS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AED BIL092 Bristol Petiole Lmb-JN2, Lbb-G12-14 inf J7 Rep1 NA 95832458 2,195666316 2104161 0,080403865 77053 8 3 2,115262451 2027108 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEDOSW_6_1_C78WNACXX.IND20_noribo_clean.fastq BIL_AEDOSW_6_2_C78WNACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AED " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AED /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AED JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AED/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AED/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEDAEDAligned.sortedByCoord.out.bam JN3_AED.count G1214_AED.count AED_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AED/counts/AED_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AED/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADG BIL076 darmorBZH Petiole Lmb-JN2 inf J7 Rep1 NA 92501598 5,123119062 4738967 5,120256409 4736319 739 197 0,002862653 2648 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADGOSW_6_1_C78ECACXX.IND3_noribo_clean.fastq BIL_ADGOSW_6_2_C78ECACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADGADGAligned.sortedByCoord.out.bam JN3_ADG.count G1214_ADG.count ADG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADG/counts/ADG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEC BIL091 Bristol Petiole Lmb-JN2, Lbb-G12-14 sup J7 Rep1 NA 78702016 49,48964077 38949345 4,031103854 3172560 0 0 45,45853692 35776785 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AECOSW_7_1_C7CAFACXX.IND22_noribo_clean.fastq BIL_AECOSW_7_2_C7CAFACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AECAECAligned.sortedByCoord.out.bam JN3_AEC.count G1214_AEC.count AEC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEC/counts/AEC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFI BIL132 Bristol Petiole Lmb-Nz-T4 inf J7 rep2 NA 85949037 0,72552529 623582 0,721230885 619891 814 0 0,004294405 3691 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFIOSW_4_1_C78EVACXX.IND21_noribo_clean.fastq BIL_AFIOSW_4_2_C78EVACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFIAFIAligned.sortedByCoord.out.bam JN3_AFI.count G1214_AFI.count AFI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFI/counts/AFI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARN BIL310 Bristol Petiole Lmb-JN2 restant J7 Rep1 NA 70101396 0,039776669 27884 0,01415949 9926 47 49 0,025617179 17958 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARNOSW_2_1_C797YACXX.IND16_noribo_clean.fastq BIL_ARNOSW_2_2_C797YACXX.IND16_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARN.count G1214_ARN.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFH BIL131 Bristol Petiole Lmb-Nz-T4 sup J7 rep2 NA 69388409 22,47483726 15594932 22,4629347 15586673 4006 0 0,011902564 8259 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFHOSW_4_1_C78EVACXX.IND20_noribo_clean.fastq BIL_AFHOSW_4_2_C78EVACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFHAFHAligned.sortedByCoord.out.bam JN3_AFH.count G1214_AFH.count AFH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFH/counts/AFH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEB BIL090 Bristol Petiole Lbb-G12-14 inf J7 Rep1 NA 75864437 3,981632395 3020643 0,00772035 5857 0 0 3,973912045 3014786 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEBOSW_6_1_C78WNACXX.IND19_noribo_clean.fastq BIL_AEBOSW_6_2_C78WNACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEBAEBAligned.sortedByCoord.out.bam JN3_AEB.count G1214_AEB.count AEB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEB/counts/AEB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFN BIL136 Bristol Petiole Lmb-JN2, Lbb-G12-14 inf J7 rep2 NA 77995681 0,414039593 322933 0,02965677 23131 1 0 0,384382822 299802 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFNOSW_2_1_C78K6ACXX.IND1_noribo_clean.fastq BIL_AFNOSW_2_2_C78K6ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFNAFNAligned.sortedByCoord.out.bam JN3_AFN.count G1214_AFN.count AFN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFN/counts/AFN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARQ BIL312 Bristol Petiole Lbb-G12-14 restant J7 Rep1 NA 57523460 0,00692587 3984 0,001001331 576 0 0 0,005924539 3408 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARQOSW_3_1_C797YACXX.IND19_noribo_clean.fastq BIL_ARQOSW_3_2_C797YACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARQ.count G1214_ARQ.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFM BIL135 Bristol Petiole Lmb-JN2, Lbb-G12-14 sup J7 rep2 NA 83323448 13,57913801 11314606 1,037272245 864291 12 1 12,54186577 10450315 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFMOSW_7_1_C78EVACXX.IND25_noribo_clean.fastq BIL_AFMOSW_7_2_C78EVACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFMAFMAligned.sortedByCoord.out.bam JN3_AFM.count G1214_AFM.count AFM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFM/counts/AFM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEA BIL089 Bristol Petiole Lbb-G12-14 sup J7 Rep1 NA 81877123 51,77931936 42395417 0,061156277 50073 1 0 51,71816308 42345344 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEAOSW_5_1_C78WNACXX.IND18_noribo_clean.fastq BIL_AEAOSW_5_2_C78WNACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEAAEAAligned.sortedByCoord.out.bam JN3_AEA.count G1214_AEA.count AEA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEA/counts/AEA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARI BIL306 darmorBZH Petiole Lmb-JN2 restant J7 Rep1 NA 81369068 0,002073269 1687 0,001634528 1330 3 6 0,000438742 357 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARIOSW_7_1_C7C8BACXX.IND12_noribo_clean.fastq BIL_ARIOSW_7_2_C7C8BACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARI.count G1214_ARI.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APL BIL108 Bristol Petiole Lmb-Nz-T4 inf J14 Rep1 NA 94522697 0,636525426 601661 0,635303498 600506 0 0 0,001221929 1155 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APLOSW_1_1_C7C8BACXX.IND5_noribo_clean.fastq BIL_APLOSW_1_2_C7C8BACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APLAPLAligned.sortedByCoord.out.bam JN3_APL.count G1214_APL.count APL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APL/counts/APL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APK BIL107 Bristol Petiole Lmb-Nz-T4 sup J14 Rep1 NA 101357017 80,3957648 81486749 80,36448725 81455047 4 0 0,031277558 31702 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APKOSW_1_1_C7C8BACXX.IND4_noribo_clean.fastq BIL_APKOSW_1_2_C7C8BACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APKAPKAligned.sortedByCoord.out.bam JN3_APK.count G1214_APK.count APK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APK/counts/APK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APG BIL104 darmorBZH Petiole plante saine inf J14 Rep1 NA 90741975 0,001554958 1411 0,001076679 977 0 0 0,000478279 434 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APGOSW_7_1_C7C89ACXX.IND1_noribo_clean.fastq BIL_APGOSW_7_2_C7C89ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APGAPGAligned.sortedByCoord.out.bam JN3_APG.count G1214_APG.count APG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APG/counts/APG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APF BIL103 darmorBZH Petiole plante saine sup J14 Rep1 NA 69673149 0,002053876 1431 0,001238641 863 0 0 0,000815235 568 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APFOSW_7_1_C7C89ACXX.IND25_noribo_clean.fastq BIL_APFOSW_7_2_C7C89ACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APFAPFAligned.sortedByCoord.out.bam JN3_APF.count G1214_APF.count APF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APF/counts/APF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADR BIL085 Bristol Petiole Lmb-JN2 sup J7 Rep1 NA 97255461 27,75199328 26990329 27,73837656 26977086 2977 612 0,013616716 13243 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADROSW_3_1_C78WNACXX.IND12_noribo_clean.fastq BIL_ADROSW_3_2_C78WNACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADRADRAligned.sortedByCoord.out.bam JN3_ADR.count G1214_ADR.count ADR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADR/counts/ADR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADF BIL075 darmorBZH Petiole Lmb-JN2 sup J7 Rep1 NA 83455265 34,46215766 28760485 34,44520487 28746337 1892 450 0,016952795 14148 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADFOSW_5_1_C78ECACXX.IND2_noribo_clean.fastq BIL_ADFOSW_5_2_C78ECACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADFADFAligned.sortedByCoord.out.bam JN3_ADF.count G1214_ADF.count ADF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADF/counts/ADF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153278 PRJEB21682 Dutreux et al, 2018 / Gay et al, 2020 AFE BIL128 Bristol Petiole plante saine inf J7 rep2 NA 77864712 0,029695095 23122 0,029408701 22899 0 0 0,000286394 223 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFEOSW_2_1_C78EVACXX.IND16_noribo_clean.fastq BIL_AFEOSW_2_2_C78EVACXX.IND16_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFEAFEAligned.sortedByCoord.out.bam JN3_AFE.count G1214_AFE.count AFE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFE/counts/AFE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFG BIL130 Bristol Petiole Lmb-JN2 inf J7 rep2 NA 62533898 0,184722213 115514 0,184399188 115312 964 492 0,000323025 202 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFGOSW_3_1_C78EVACXX.IND19_noribo_clean.fastq BIL_AFGOSW_3_2_C78EVACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFGAFGAligned.sortedByCoord.out.bam JN3_AFG.count G1214_AFG.count AFG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFG/counts/AFG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADN BIL082 darmorBZH Petiole Lmb-JN2, Lbb-G12-14 inf J7 Rep1 NA 82145766 2,274854921 1868697 0,046523396 38217 2 1 2,228331525 1830480 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADNOSW_2_1_C78WNACXX.IND9_noribo_clean.fastq BIL_ADNOSW_2_2_C78WNACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADNADNAligned.sortedByCoord.out.bam JN3_ADN.count G1214_ADN.count ADN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADN/counts/ADN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFD BIL127 Bristol Petiole plante saine sup J7 rep2 NA 65370071 0,000605782 396 0,0005553 363 0 0 5,04818E-05 33 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFDOSW_2_1_C78EVACXX.IND15_noribo_clean.fastq BIL_AFDOSW_2_2_C78EVACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFDAFDAligned.sortedByCoord.out.bam JN3_AFD.count G1214_AFD.count AFD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFD/counts/AFD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARM BIL309 darmorBZH Petiole Lmb-JN2, Lbb-G12-14 restant J7 Rep1 NA 64000505 0,013243645 8476 0,003939031 2521 0 0 0,009304614 5955 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARMOSW_8_1_C7C8BACXX.IND15_noribo_clean.fastq BIL_ARMOSW_8_2_C7C8BACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARM.count G1214_ARM.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADL BIL080 darmorBZH Petiole Lbb-G12-14 inf J7 Rep1 NA 98259099 1,251869814 1230076 0,002920849 2870 0 0 1,248948965 1227206 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADLOSW_8_1_C78ECACXX.IND7_noribo_clean.fastq BIL_ADLOSW_8_2_C78ECACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADLADLAligned.sortedByCoord.out.bam JN3_ADL.count G1214_ADL.count ADL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADL/counts/ADL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARL BIL308 darmorBZH Petiole Lbb-G12-14 restant J7 Rep1 NA 73973411 0,000796232 589 0,000548846 406 0 0 0,000247386 183 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARLOSW_8_1_C7C8BACXX.IND14_noribo_clean.fastq BIL_ARLOSW_8_2_C7C8BACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARL.count G1214_ARL.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGC BIL147 Bristol Petiole Lmb-Nz-T4 inf J14 rep2 NA 77391205 2,562461716 1983120 2,56037104 1981502 1802 0 0,002090677 1618 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGCOSW_4_1_C772BACXX.IND9_noribo_clean.fastq BIL_AGCOSW_4_2_C772BACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGCAGCAligned.sortedByCoord.out.bam JN3_AGC.count G1214_AGC.count AGC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGC/counts/AGC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEK BIL098 darmorBZH Petiole Lmb-Nz-T4 inf J14 Rep1 NA 84595415 1,577486203 1334481 1,574822938 1332228 142 0 0,002663265 2253 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEKOSW_2_1_C78DVACXX.IND1_noribo_clean.fastq BIL_AEKOSW_2_2_C78DVACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEKAEKAligned.sortedByCoord.out.bam JN3_AEK.count G1214_AEK.count AEK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEK/counts/AEK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEP BIL118 darmorBZH Petiole Lmb-JN2 inf J7 rep2 NA 87962847 0,328007801 288525 0,327656516 288216 2399 1272 0,000351285 309 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEPOSW_4_1_C78DVACXX.IND5_noribo_clean.fastq BIL_AEPOSW_4_2_C78DVACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEPAEPAligned.sortedByCoord.out.bam JN3_AEP.count G1214_AEP.count AEP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEP/counts/AEP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEI BIL097 darmorBZH Petiole Lmb-Nz-T4 sup J14 Rep1 NA 99484262 79,96121035 79548820 79,92782718 79515609 105 1 0,03338317 33211 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEIOSW_2_1_C78DVACXX.IND27_noribo_clean.fastq BIL_AEIOSW_2_2_C78DVACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEIAEIAligned.sortedByCoord.out.bam JN3_AEI.count G1214_AEI.count AEI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEI/counts/AEI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153281 PRJEB21682 Dutreux et al, 2018 AEF BIL094 Bristol Petiole plante saine inf J7 Rep1 NA 77526913 0,002323064 1801 0,002032842 1576 0 0 0,000290222 225 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEFOSW_7_1_C78WNACXX.IND22_noribo_clean.fastq BIL_AEFOSW_7_2_C78WNACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEFAEFAligned.sortedByCoord.out.bam JN3_AEF.count G1214_AEF.count AEF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEF/counts/AEF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFF BIL129 Bristol Petiole Lmb-JN2 sup J7 rep2 NA 81262300 13,38705033 10878625 13,37837718 10871577 8991 2152 0,008673149 7048 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFFOSW_3_1_C78EVACXX.IND18_noribo_clean.fastq BIL_AFFOSW_3_2_C78EVACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFFAFFAligned.sortedByCoord.out.bam JN3_AFF.count G1214_AFF.count AFF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFF/counts/AFF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEE BIL093 Bristol Petiole plante saine sup J7 Rep1 NA 81072220 0,003271157 2652 0,002236278 1813 0 0 0,00103488 839 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEEOSW_7_1_C78WNACXX.IND21_noribo_clean.fastq BIL_AEEOSW_7_2_C78WNACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEEAEEAligned.sortedByCoord.out.bam JN3_AEE.count G1214_AEE.count AEE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEE/counts/AEE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFK BIL133 Bristol Petiole Lbb-G12-14 inf J7 rep2 NA 74125122 23,42763497 17365763 0,06212064 46047 7 0 23,36551433 17319716 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFKOSW_5_1_C78EVACXX.IND22_noribo_clean.fastq BIL_AFKOSW_5_2_C78EVACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFKAFKAligned.sortedByCoord.out.bam JN3_AFK.count G1214_AFK.count AFK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFK/counts/AFK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFL BIL134 Bristol Petiole Lbb-G12-14 sup J7 rep2 NA 91907198 0,299689258 275436 0,001366596 1256 0 0 0,298322662 274180 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFLOSW_5_1_C78EVACXX.IND23_noribo_clean.fastq BIL_AFLOSW_5_2_C78EVACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFLAFLAligned.sortedByCoord.out.bam JN3_AFL.count G1214_AFL.count AFL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFL/counts/AFL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGA BIL145 darmorBZH Petiole plante saine inf J14 rep2 NA 88897635 0,011854084 10538 0,003975359 3534 3 0 0,007878725 7004 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGAOSW_4_1_C772BACXX.IND8_noribo_clean.fastq BIL_AGAOSW_4_2_C772BACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGAAGAAligned.sortedByCoord.out.bam JN3_AGA.count G1214_AGA.count AGA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGA/counts/AGA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEN BIL117 darmorBZH Petiole Lmb-JN2 sup J7 rep2 NA 97757453 10,76963615 10528122 10,76183521 10520496 7914 2384 0,00780094 7626 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AENOSW_4_1_C78DVACXX.IND4_noribo_clean.fastq BIL_AENOSW_4_2_C78DVACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AENAENAligned.sortedByCoord.out.bam JN3_AEN.count G1214_AEN.count AEN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEN/counts/AEN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810044 PRJEB3908 Gay et al, 2020 AFC BIL126 darmorBZH Petiole plante saine inf J7 rep2 NA 75591773 0,009077707 6862 0,008986428 6793 0 0 9,12798E-05 69 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFCOSW_8_1_C78DVACXX.IND14_noribo_clean.fastq BIL_AFCOSW_8_2_C78DVACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFCAFCAligned.sortedByCoord.out.bam JN3_AFC.count G1214_AFC.count AFC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFC/counts/AFC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APP BIL111 Bristol Petiole Lmb-JN2, Lbb-G12-14 total attaché( =sup?) J14 Rep1 NA 96273038 22,16153707 21335585 0,877115771 844426 73 27 21,28442129 20491159 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APPOSW_3_1_C7C8BACXX.IND8_noribo_clean.fastq BIL_APPOSW_3_2_C7C8BACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APPAPPAligned.sortedByCoord.out.bam JN3_APP.count G1214_APP.count APP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APP/counts/APP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFV BIL144 darmorBZH Petiole plante saine sup J14 rep2 NA 63066014 0,005538641 3493 0,00332033 2094 0 0 0,00221831 1399 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFVOSW_3_1_C772BACXX.IND7_noribo_clean.fastq BIL_AFVOSW_3_2_C772BACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFVAFVAligned.sortedByCoord.out.bam JN3_AFV.count G1214_AFV.count AFV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFV/counts/AFV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APQ BIL112 Bristol Petiole Lmb-JN2, Lbb-G12-14 total détaché(=Inf?) J14 Rep1 NA 77680727 66,79872216 51889733 2,928842311 2275146 0 0 63,86987985 49614587 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APQOSW_7_1_C797YACXX.IND5_noribo_clean.fastq BIL_APQOSW_7_2_C797YACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APQAPQAligned.sortedByCoord.out.bam JN3_APQ.count G1214_APQ.count APQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APQ/counts/APQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFB BIL125 darmorBZH Petiole plante saine sup J7 rep2 NA 89761892 0,001315703 1181 0,001219894 1095 1 0 9,5809E-05 86 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFBOSW_8_1_C78DVACXX.IND13_noribo_clean.fastq BIL_AFBOSW_8_2_C78DVACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFBAFBAligned.sortedByCoord.out.bam JN3_AFB.count G1214_AFB.count AFB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFB/counts/AFB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGE BIL149 Bristol Petiole Lmb-JN2, Lbb-G12-14 inf(=détaché?) J14 rep2 NA 80936590 0,402109849 325454 0,009522269 7707 0 0 0,39258758 317747 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGEOSW_5_1_C772BACXX.IND11_noribo_clean.fastq BIL_AGEOSW_5_2_C772BACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGEAGEAligned.sortedByCoord.out.bam JN3_AGE.count G1214_AGE.count AGE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGE/counts/AGE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEL BIL115 darmorBZH Petiole rien tout J0 rep2 NA 87537012 0,000121092 106 7,88238E-05 69 0 0 4,22678E-05 37 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AELOSW_3_1_C78DVACXX.IND2_noribo_clean.fastq BIL_AELOSW_3_2_C78DVACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AELAELAligned.sortedByCoord.out.bam JN3_AEL.count G1214_AEL.count AEL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEL/counts/AEL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife API BIL106 Bristol Petiole Lmb-JN2 inf J14 Rep1 NA 89624591 2,848166972 2552658 2,845990114 2550707 2308 332 0,002176858 1951 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APIOSW_8_1_C7C89ACXX.IND3_noribo_clean.fastq BIL_APIOSW_8_2_C7C89ACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/API " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/API /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/API JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) API/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/API/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APIAPIAligned.sortedByCoord.out.bam JN3_API.count G1214_API.count API_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/API/counts/API_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/API/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADK BIL079 darmorBZH Petiole lbb sup J7 Rep1 NA 93268407 34,29304523 31984577 0,030155978 28126 0 0 34,26288925 31956451 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADKOSW_7_1_C78ECACXX.IND6_noribo_clean.fastq BIL_ADKOSW_7_2_C78ECACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADKADKAligned.sortedByCoord.out.bam JN3_ADK.count G1214_ADK.count ADK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADK/counts/ADK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEH BIL096 darmorBZH Petiole Lmb-JN2 inf J14 Rep1 NA 106458900 7,803342886 8307353 7,797473015 8301104 1465 345 0,005869871 6249 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEHOSW_8_1_C78WNACXX.IND25_noribo_clean.fastq BIL_AEHOSW_8_2_C78WNACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEHAEHAligned.sortedByCoord.out.bam JN3_AEH.count G1214_AEH.count AEH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEH/counts/AEH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153280 PRJEB21682 Dutreux et al, 2018 AET BIL122 darmorBZH Petiole lbb inf J7 rep2 NA 84325988 0,303716572 256112 0,000846714 714 0 0 0,302869858 255398 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AETOSW_6_1_C78DVACXX.IND10_noribo_clean.fastq BIL_AETOSW_6_2_C78DVACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AET " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AET /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AET JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AET/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AET/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AETAETAligned.sortedByCoord.out.bam JN3_AET.count G1214_AET.count AET_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AET/counts/AET_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AET/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APN BIL110 Bristol Petiole lbb inf J14 Rep1 NA 83739231 21,7562435 18218511 0,023678269 19828 0 0 21,73256523 18198683 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APNOSW_2_1_C7C8BACXX.IND7_noribo_clean.fastq BIL_APNOSW_2_2_C7C8BACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APNAPNAligned.sortedByCoord.out.bam JN3_APN.count G1214_APN.count APN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APN/counts/APN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AES BIL121 darmorBZH Petiole lbb sup J7 rep2 NA 78035652 7,72993093 6032102 0,008111677 6330 0 0 7,721819253 6025772 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AESOSW_6_1_C78DVACXX.IND9_noribo_clean.fastq BIL_AESOSW_6_2_C78DVACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AES " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AES /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AES JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AES/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AES/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AESAESAligned.sortedByCoord.out.bam JN3_AES.count G1214_AES.count AES_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AES/counts/AES_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AES/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADV BIL088 Bristol Petiole Lmb-Nz-T4 inf J7 Rep1 NA 82955853 3,474093624 2881964 3,45960399 2869944 1414 0 0,014489635 12020 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADVOSW_5_1_C78WNACXX.IND15_noribo_clean.fastq BIL_ADVOSW_5_2_C78WNACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADVADVAligned.sortedByCoord.out.bam JN3_ADV.count G1214_ADV.count ADV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADV/counts/ADV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADT BIL087 Bristol Petiole Lmb-Nz-T4 sup J7 Rep1 NA 87397088 36,99876476 32335843 36,98199304 32321185 3702 0 0,016771726 14658 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADTOSW_4_1_C78WNACXX.IND14_noribo_clean.fastq BIL_ADTOSW_4_2_C78WNACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADTADTAligned.sortedByCoord.out.bam JN3_ADT.count G1214_ADT.count ADT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADT/counts/ADT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153279 PRJEB21682 Dutreux et al, 2018 APH BIL105 Bristol Petiole Lmb-JN2 sup J14 Rep1 NA 74612702 80,57097168 60116179 80,53140603 60086658 6 2 0,039565649 29521 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APHOSW_8_1_C7C89ACXX.IND2_noribo_clean.fastq BIL_APHOSW_8_2_C7C89ACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APHAPHAligned.sortedByCoord.out.bam JN3_APH.count G1214_APH.count APH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APH/counts/APH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APM BIL109 Bristol Petiole Lbb-G12-14 sup J14 Rep1 NA 100061967 30,99099481 31010199 0,028364423 28382 0 0 30,96263039 30981817 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APMOSW_2_1_C7C8BACXX.IND6_noribo_clean.fastq BIL_APMOSW_2_2_C7C8BACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APMAPMAligned.sortedByCoord.out.bam JN3_APM.count G1214_APM.count APM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APM/counts/APM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARP BIL311 Bristol Petiole Lmb-Nz-T4 restant J7 Rep1 NA 66508762 0,005456424 3629 0,005307571 3530 25 0 0,000148853 99 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARPOSW_3_1_C797YACXX.IND18_noribo_clean.fastq BIL_ARPOSW_3_2_C797YACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARP.count G1214_ARP.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADM BIL081 darmorBZH Petiole Lmb-JN2, Lbb-G12-14 sup J7 Rep1 NA 83859056 41,0679307 34439179 3,146913555 2638972 0 0 37,92101714 31800207 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADMOSW_8_1_C78ECACXX.IND8_noribo_clean.fastq BIL_ADMOSW_8_2_C78ECACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADMADMAligned.sortedByCoord.out.bam JN3_ADM.count G1214_ADM.count ADM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADM/counts/ADM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADQ BIL084 darmorBZH Petiole plante saine inf J7 Rep1 NA 91089724 0,010627983 9681 0,008176553 7448 0 0 0,002451429 2233 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADQOSW_3_1_C78WNACXX.IND11_noribo_clean.fastq BIL_ADQOSW_3_2_C78WNACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADQADQAligned.sortedByCoord.out.bam JN3_ADQ.count G1214_ADQ.count ADQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADQ/counts/ADQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFA BIL124 darmorBZH Petiole Lmb-JN2, Lbb-G12-14 inf J7 rep2 NA 80815070 0,100105092 80900 0,002541605 2054 6 3 0,097563487 78846 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFAOSW_7_1_C78DVACXX.IND12_noribo_clean.fastq BIL_AFAOSW_7_2_C78DVACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFAAFAAligned.sortedByCoord.out.bam JN3_AFA.count G1214_AFA.count AFA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFA/counts/AFA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADP BIL083 darmorBZH Petiole plante saine sup J7 Rep1 NA 93542107 0,001978788 1851 0,000890508 833 0 0 0,00108828 1018 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADPOSW_2_1_C78WNACXX.IND10_noribo_clean.fastq BIL_ADPOSW_2_2_C78WNACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADPADPAligned.sortedByCoord.out.bam JN3_ADP.count G1214_ADP.count ADP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADP/counts/ADP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEG BIL095 darmorBZH Petiole Lmb-JN2 sup J14 Rep1 NA 83849396 82,76211316 69395532 82,72203296 69361925 0 3 0,040080193 33607 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEGOSW_8_1_C78WNACXX.IND23_noribo_clean.fastq BIL_AEGOSW_8_2_C78WNACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEGAEGAligned.sortedByCoord.out.bam JN3_AEG.count G1214_AEG.count AEG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEG/counts/AEG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810043 PRJEB3908 Gay et al, 2020 APB BIL099 darmorBZH Petiole Lbb-G12-14 total attaché J14 Rep1 NA 73793575 67,48733613 49801318 0,051015281 37646 0 0 67,43632085 49763672 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APBOSW_5_1_C7C89ACXX.IND20_noribo_clean.fastq BIL_APBOSW_5_2_C7C89ACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APBAPBAligned.sortedByCoord.out.bam JN3_APB.count G1214_APB.count APB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APB/counts/APB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APC BIL100 darmorBZH Petiole Lbb-G12-14 total détaché J14 Rep1 NA 66342202 73,59525088 48824710 0,121253135 80442 0 0 73,47399774 48744268 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APCOSW_5_1_C7C89ACXX.IND21_noribo_clean.fastq BIL_APCOSW_5_2_C7C89ACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APCAPCAligned.sortedByCoord.out.bam JN3_APC.count G1214_APC.count APC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APC/counts/APC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFQ BIL138 darmorBZH Petiole Lmb-JN2 inf J14 rep2 NA 83561594 3,966383169 3314373 3,963702511 3312133 756 130 0,002680657 2240 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFQOSW_3_1_C78K6ACXX.IND3_noribo_clean.fastq BIL_AFQOSW_3_2_C78K6ACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFQAFQAligned.sortedByCoord.out.bam JN3_AFQ.count G1214_AFQ.count AFQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFQ/counts/AFQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEV BIL123 darmorBZH Petiole Lmb-JN2, Lbb-G12-14 sup J7 rep2 NA 86431649 4,922763882 4254826 0,40118869 346754 9 0 4,521575193 3908072 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEVOSW_7_1_C78DVACXX.IND11_noribo_clean.fastq BIL_AEVOSW_7_2_C78DVACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEVAEVAligned.sortedByCoord.out.bam JN3_AEV.count G1214_AEV.count AEV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEV/counts/AEV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGD BIL148 Bristol Petiole Lbb-G12-14 inf J14 rep2 NA 83278706 0,534969888 445516 0,024949955 20778 0 0 0,510019932 424738 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGDOSW_5_1_C772BACXX.IND10_noribo_clean.fastq BIL_AGDOSW_5_2_C772BACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGDAGDAligned.sortedByCoord.out.bam JN3_AGD.count G1214_AGD.count AGD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGD/counts/AGD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFT BIL143 darmorBZH Petiole Lbb-G12-14 inf J14 rep2 NA 88492354 3,617746455 3201429 0,006826578 6041 0 0 3,610919877 3195388 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFTOSW_3_1_C772BACXX.IND6_noribo_clean.fastq BIL_AFTOSW_3_2_C772BACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFTAFTAligned.sortedByCoord.out.bam JN3_AFT.count G1214_AFT.count AFT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFT/counts/AFT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APD BIL101 darmorBZH Petiole Lmb-JN2, Lbb-G12-14 total attaché J14 Rep1 NA 75167614 36,69813439 27585112 1,959794813 1473131 77 30 34,73833957 26111981 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APDOSW_6_1_C7C89ACXX.IND22_noribo_clean.fastq BIL_APDOSW_6_2_C7C89ACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APDAPDAligned.sortedByCoord.out.bam JN3_APD.count G1214_APD.count APD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APD/counts/APD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APE BIL102 darmorBZH Petiole Lmb-JN2, Lbb-G12-14 total détaché J14 Rep1 NA 82712240 61,31910827 50718408 1,730534683 1431364 0 0 59,58857359 49287044 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APEOSW_6_1_C7C89ACXX.IND23_noribo_clean.fastq BIL_APEOSW_6_2_C7C89ACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APEAPEAligned.sortedByCoord.out.bam JN3_APE.count G1214_APE.count APE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APE/counts/APE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AGB BIL146 Bristol Petiole Lmb-JN2 inf J14 rep2 NA 85072009 2,327376564 1979946 2,313525945 1968163 1645 590 0,013850619 11783 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AGBOSW_1_1_C7C89ACXX.IND3_noribo_clean.fastq BIL_AGBOSW_1_2_C7C89ACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AGB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AGB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGBAGBAligned.sortedByCoord.out.bam JN3_AGB.count G1214_AGB.count AGB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AGB/counts/AGB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AGB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFP BIL137 darmorBZH Petiole Lmb-JN2 sup ou nécrosé sur l'ensemble du pétiole J14 rep2 NA 89330521 69,4610121 62049884 69,42853608 62020873 278 35 0,032476022 29011 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFPOSW_2_1_C78K6ACXX.IND2_noribo_clean.fastq BIL_AFPOSW_2_2_C78K6ACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFPAFPAligned.sortedByCoord.out.bam JN3_AFP.count G1214_AFP.count AFP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFP/counts/AFP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810045 PRJEB3908 Gay et al, 2020 AFR BIL140 darmorBZH Petiole Lmb-Nz-T4 inf J14 rep2 NA 97408118 0,727343896 708492 0,726567779 707736 200 0 0,000776116 756 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFROSW_3_1_C78K6ACXX.IND4_noribo_clean.fastq BIL_AFROSW_3_2_C78K6ACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFRAFRAligned.sortedByCoord.out.bam JN3_AFR.count G1214_AFR.count AFR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFR/counts/AFR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AFS BIL142 darmorBZH Petiole Lbb-G12-14 Inf (=total détaché?) J14 rep2 NA 82765487 2,560075554 2118859 0,018304731 15150 0 0 2,541770823 2103709 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AFSOSW_4_1_C78K6ACXX.IND5_noribo_clean.fastq BIL_AFSOSW_4_2_C78K6ACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AFS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AFS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFSAFSAligned.sortedByCoord.out.bam JN3_AFS.count G1214_AFS.count AFS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AFS/counts/AFS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AFS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AER BIL120 darmorBZH Petiole Lmb-Nz-T4 inf J7 rep2 NA 97520367 0,082904733 80849 0,082804241 80751 302 0 0,000100492 98 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEROSW_5_1_C78DVACXX.IND7_noribo_clean.fastq BIL_AEROSW_5_2_C78DVACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AER " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AER /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AER JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AER/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AER/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AERAERAligned.sortedByCoord.out.bam JN3_AER.count G1214_AER.count AER_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AER/counts/AER_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AER/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADI BIL078 darmorBZH Petiole Lmb-Nz-T4 inf J7 Rep1 NA 78253522 0,06111546 47825 0,052443646 41039 159 0 0,008671814 6786 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADIOSW_7_1_C78ECACXX.IND5_noribo_clean.fastq BIL_ADIOSW_7_2_C78ECACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADIADIAligned.sortedByCoord.out.bam JN3_ADI.count G1214_ADI.count ADI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADI/counts/ADI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APT BIL139 darmorBZH Petiole Lmb-Nz-T4 sup J14 rep2 NA 96801171 56,03875701 54246173 56,01197118 54220244 14 0 0,026785833 25929 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APTOSW_7_1_C797YACXX.IND6_noribo_clean.fastq BIL_APTOSW_7_2_C797YACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APTAPTAligned.sortedByCoord.out.bam JN3_APT.count G1214_APT.count APT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APT/counts/APT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADH BIL077 darmorBZH Petiole Lmb-Nz-T4 sup J7 Rep1 NA 86498008 6,19779822 5360972 6,195469842 5358958 1690 0 0,002328377 2014 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADHOSW_6_1_C78ECACXX.IND4_noribo_clean.fastq BIL_ADHOSW_6_2_C78ECACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADHADHAligned.sortedByCoord.out.bam JN3_ADH.count G1214_ADH.count ADH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADH/counts/ADH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AEQ BIL119 darmorBZH Petiole Lmb-Nz-T4 sup J7 rep2 NA 88073875 7,706177343 6787129 7,70161867 6783114 1419 0 0,004558673 4015 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AEQOSW_5_1_C78DVACXX.IND6_noribo_clean.fastq BIL_AEQOSW_5_2_C78DVACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AEQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AEQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEQAEQAligned.sortedByCoord.out.bam JN3_AEQ.count G1214_AEQ.count AEQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AEQ/counts/AEQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AEQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APV BIL141 darmorBZH Petiole Lbb-G12-14 total détaché J14 rep2 NA 83575369 45,56226249 38078829 0,04390887 36697 0 0 45,51835362 38042132 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APVOSW_4_1_C78K6ACXX.IND1_noribo_clean.fastq BIL_APVOSW_4_2_C78K6ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APVAPVAligned.sortedByCoord.out.bam JN3_APV.count G1214_APV.count APV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/APV/counts/APV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARK BIL307 darmorBZH Petiole Lmb-Nz-T4 restant J7 Rep1 NA 76392986 0,001703036 1301 0,001454322 1111 3 0 0,000248714 190 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARKOSW_7_1_C7C8BACXX.IND13_noribo_clean.fastq BIL_ARKOSW_7_2_C7C8BACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARK.count G1214_ARK.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAB BIL382 Bristol Tige (rondelle) NI NA 28j manip1 prelevt2 83633133 0,001257875 1052 0,001110804 929 0 1 0,000147071 123 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BABOSW_7_1_C7LY4ACXX.IND10_noribo_clean.fastq BIL_BABOSW_7_2_C7LY4ACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BABBABAligned.sortedByCoord.out.bam JN3_BAB.count G1214_BAB.count BAB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAB/counts/BAB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATA BIL343 Bristol Tige (rondelle) NI NA 14j manip2 prelevt1 76548787 0,000274335 210 0,000266497 204 0 0 7,83814E-06 6 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATAOSW_8_1_C7KFAACXX.IND19_noribo_clean.fastq BIL_ATAOSW_8_2_C7KFAACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATAATAAligned.sortedByCoord.out.bam JN3_ATA.count G1214_ATA.count ATA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATA/counts/ATA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAE BIL385 Bristol Tige (rondelle) NI NA 28j manip2 prelevt2 66601317 0,001163641 775 0,000845329 563 0 0 0,000318312 212 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAEOSW_1_1_C7M86ACXX.IND22_noribo_clean.fastq BIL_BAEOSW_1_2_C7M86ACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAEBAEAligned.sortedByCoord.out.bam JN3_BAE.count G1214_BAE.count BAE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAE/counts/BAE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATD BIL346 Bristol Tige (rondelle) NI NA 14j manip3 prelevt1 77646780 0,000427577 332 0,000359319 279 0 0 6,82578E-05 53 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATDOSW_4_1_C7KFEACXX.IND22_noribo_clean.fastq BIL_ATDOSW_4_2_C7KFEACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATDATDAligned.sortedByCoord.out.bam JN3_ATD.count G1214_ATD.count ATD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATD/counts/ATD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAH BIL388 Bristol Tige (rondelle) NI NA 28j manip3 prelevt2 84441614 0,000162242 137 0,000143294 121 0 0 1,8948E-05 16 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAHOSW_1_1_C7LWVACXX.IND18_noribo_clean.fastq BIL_BAHOSW_1_2_C7LWVACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAHBAHAligned.sortedByCoord.out.bam JN3_BAH.count G1214_BAH.count BAH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAH/counts/BAH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATG BIL349 Bristol Tige (rondelle) NI NA 14j manip4 prelevt1 84661101 0,000401601 340 0,000194895 165 0 0 0,000206707 175 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATGOSW_6_1_C7KFEACXX.IND27_noribo_clean.fastq BIL_ATGOSW_6_2_C7KFEACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATGATGAligned.sortedByCoord.out.bam JN3_ATG.count G1214_ATG.count ATG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATG/counts/ATG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARV BIL316 Darmor Tige (rondelle) plante saine NA 14j NA Rep1 93818819 7,24801E-05 68 5,75577E-05 54 0 0 1,49224E-05 14 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARVOSW_5_1_C797YACXX.IND23_noribo_clean.fastq BIL_ARVOSW_5_2_C797YACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARV.count G1214_ARV.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASF BIL322 Darmor Tige (rondelle) plante saine NA 14j NA rep2 68871670 0,000126322 87 9,14745E-05 63 0 0 3,48474E-05 24 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASFOSW_7_1_C79GFACXX.IND5_noribo_clean.fastq BIL_ASFOSW_7_2_C79GFACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASF.count G1214_ASF.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVI BIL370 Bristol Tige (rondelle) Lbb-B3.5 NA 14j manip2 prelevt1 103542102 0,05448798 56418 0,002657856 2752 0 0 0,051830124 53666 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVIOSW_7_1_C7M24ACXX.IND22_noribo_clean.fastq BIL_AVIOSW_7_2_C7M24ACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVIAVIAligned.sortedByCoord.out.bam JN3_AVI.count G1214_AVI.count AVI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVI/counts/AVI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATK BIL352 Bristol Tige (rondelle) Lmb-JN2 NA 14j manip2 prelevt1 137647626 3,08274405 4243324 3,081044057 4240984 290 100 0,001699993 2340 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATKOSW_8_1_C73PUACXX.IND1_noribo_clean.fastq BIL_ATKOSW_8_2_C73PUACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATKATKAligned.sortedByCoord.out.bam JN3_ATK.count G1214_ATK.count ATK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATK/counts/ATK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153293 PRJEB21682 Dutreux et al, 2018 / Gay et al, 2020 AVL BIL372 Bristol Tige (rondelle) Lbb-B3.5 NA 14j manip3 prelevt1 75910407 0,427075829 324195 0,000765376 581 0 0 0,426310453 323614 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVLOSW_1_1_C7M86ACXX.IND21_noribo_clean.fastq BIL_AVLOSW_1_2_C7M86ACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVLAVLAligned.sortedByCoord.out.bam JN3_AVL.count G1214_AVL.count AVL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVL/counts/AVL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153296 PRJEB21682 Dutreux et al, 2018 ATN BIL355 Bristol Tige (rondelle) Lmb-JN2 NA 14j manip3 prelevt1 79468405 2,445654974 1943523 2,444468339 1942580 223 97 0,001186635 943 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATNOSW_8_1_C7KFEACXX.IND5_noribo_clean.fastq BIL_ATNOSW_8_2_C7KFEACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATNATNAligned.sortedByCoord.out.bam JN3_ATN.count G1214_ATN.count ATN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATN/counts/ATN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810064 PRJEB3908 Gay et al, 2020 AVN BIL374 Bristol Tige (rondelle) Lbb-B3.5 NA 14j manip4 prelevt1 106146801 0,067400053 71543 7,1599E-05 76 0 0 0,067328454 71467 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVNOSW_3_1_C7LY4ACXX.IND2_noribo_clean.fastq BIL_AVNOSW_3_2_C7LY4ACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVNAVNAligned.sortedByCoord.out.bam JN3_AVN.count G1214_AVN.count AVN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVN/counts/AVN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATR BIL358 Bristol Tige (rondelle) Lmb-JN2 NA 14j manip4 prelevt1 78954292 2,371216247 1872177 2,370104212 1871299 203 55 0,001112036 878 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATROSW_1_1_C7M24ACXX.IND9_noribo_clean.fastq BIL_ATROSW_1_2_C7M24ACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATRATRAligned.sortedByCoord.out.bam JN3_ATR.count G1214_ATR.count ATR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATR/counts/ATR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810065 PRJEB3908 Gay et al, 2020 ASC BIL319 Bristol Tige (rondelle) plante saine NA 14j NA Rep1 79557282 0,000119411 95 0,000113126 90 0 1 6,28478E-06 5 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASCOSW_1_1_C79GFACXX.IND2_noribo_clean.fastq BIL_ASCOSW_1_2_C79GFACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASC.count G1214_ASC.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASI BIL325 Bristol Tige (rondelle) plante saine NA 14j NA rep2 64154922 0,013147861 8435 0,013037191 8364 0 0 0,00011067 71 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASIOSW_3_1_C79GFACXX.IND8_noribo_clean.fastq BIL_ASIOSW_3_2_C79GFACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASI.count G1214_ASI.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASA BIL317 Bristol Tige (rondelle) Lmb-JN2 NA 14j NA Rep1 78507299 0,067770769 53205 0,067712175 53159 180 56 5,85933E-05 46 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASAOSW_2_1_C78PRACXX.IND25_noribo_clean.fastq BIL_ASAOSW_2_2_C78PRACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASA.count G1214_ASA.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASG BIL323 Bristol Tige (rondelle) Lmb-JN2 NA 14j NA rep2 68850774 9,00498E-05 62 7,40732E-05 51 1 0 1,59766E-05 11 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASGOSW_2_1_C79GFACXX.IND6_noribo_clean.fastq BIL_ASGOSW_2_2_C79GFACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASG.count G1214_ASG.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBA BIL400 Bristol Tige (rondelle) Lmb-Nz-T4 NA 28j manip1 prelevt2 105149462 2,299253799 2417653 2,298243808 2416591 51 0 0,001009991 1062 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBAOSW_7_1_C7LWVACXX.IND4_noribo_clean.fastq BIL_BBAOSW_7_2_C7LWVACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBABBAAligned.sortedByCoord.out.bam JN3_BBA.count G1214_BBA.count BBA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBA/counts/BBA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBD BIL403 Bristol Tige (rondelle) Lmb-Nz-T4 NA 28j manip2 prelevt2 80427711 1,052773962 846722 1,052042871 846134 20 0 0,000731091 588 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBDOSW_8_1_C7CAHACXX.IND1_noribo_clean.fastq BIL_BBDOSW_8_2_C7CAHACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBDBBDAligned.sortedByCoord.out.bam JN3_BBD.count G1214_BBD.count BBD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBD/counts/BBD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBG BIL406 Bristol Tige (rondelle) Lmb-Nz-T4 NA 28j manip3 prelevt2 96345772 2,08413816 2007979 2,083543427 2007406 21 0 0,000594733 573 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBGOSW_5_1_C7M17ACXX.IND9_noribo_clean.fastq BIL_BBGOSW_5_2_C7M17ACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBGBBGAligned.sortedByCoord.out.bam JN3_BBG.count G1214_BBG.count BBG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBG/counts/BBG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVQ BIL376 Bristol Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 14j manip2 prelevt1 80433633 0,530661098 426830 0,384050786 308906 763 171 0,146610312 117924 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVQOSW_4_1_C7LY4ACXX.IND4_noribo_clean.fastq BIL_AVQOSW_4_2_C7LY4ACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVQAVQAligned.sortedByCoord.out.bam JN3_AVQ.count G1214_AVQ.count AVQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVQ/counts/AVQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVS BIL378 Bristol Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 14j manip3 prelevt1 84820878 1,66639869 1413454 1,25824682 1067256 625 304 0,40815187 346198 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVSOSW_5_1_C7LY4ACXX.IND6_noribo_clean.fastq BIL_AVSOSW_5_2_C7LY4ACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVSAVSAligned.sortedByCoord.out.bam JN3_AVS.count G1214_AVS.count AVS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVS/counts/AVS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153298 PRJEB21682 Dutreux et al, 2018 AVV BIL380 Bristol Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 14j manip4 prelevt1 80137575 1,461997072 1171609 1,283265684 1028378 536 226 0,178731388 143231 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVVOSW_6_1_C7LY4ACXX.IND8_noribo_clean.fastq BIL_AVVOSW_6_2_C7LY4ACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVVAVVAligned.sortedByCoord.out.bam JN3_AVV.count G1214_AVV.count AVV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVV/counts/AVV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBR BIL415 Bristol Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 28j manip1 prelevt2 85561112 2,133487933 1825436 1,957936218 1675232 240 104 0,175551716 150204 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBROSW_7_1_C7M17ACXX.IND19_noribo_clean.fastq BIL_BBROSW_7_2_C7M17ACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBRBBRAligned.sortedByCoord.out.bam JN3_BBR.count G1214_BBR.count BBR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBR/counts/BBR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBT BIL417 Bristol Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 28j manip2 prelevt2 78628109 2,309146211 1815638 2,188888963 1721082 138 43 0,120257248 94556 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBTOSW_8_1_C7M17ACXX.IND21_noribo_clean.fastq BIL_BBTOSW_8_2_C7M17ACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBTBBTAligned.sortedByCoord.out.bam JN3_BBT.count G1214_BBT.count BBT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBT/counts/BBT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BCA BIL419 Bristol Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 28j manip3 prelevt2 90513565 0,032143248 29094 0,012508622 11322 16 9 0,019634626 17772 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCAOSW_5_1_C7M86ACXX.IND23_noribo_clean.fastq BIL_BCAOSW_5_2_C7M86ACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BCABCAAligned.sortedByCoord.out.bam JN3_BCA.count G1214_BCA.count BCA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BCA/counts/BCA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATL BIL353 Darmor Tige (rondelle) Lmb-JN2 NA 14j manip2 prelevt1 71306107 3,370669219 2403493 3,368919018 2402245 139 33 0,001750201 1248 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATLOSW_7_1_C7KFEACXX.IND3_noribo_clean.fastq BIL_ATLOSW_7_2_C7KFEACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATLATLAligned.sortedByCoord.out.bam JN3_ATL.count G1214_ATL.count ATL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATL/counts/ATL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVK BIL371 Darmor Tige (rondelle) Lbb-B3.5 NA 14j manip2 prelevt1 64015739 0,053680549 34364 0,000154649 99 0 0 0,053525899 34265 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVKOSW_7_1_C7M24ACXX.IND23_noribo_clean.fastq BIL_AVKOSW_7_2_C7M24ACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVKAVKAligned.sortedByCoord.out.bam JN3_AVK.count G1214_AVK.count AVK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVK/counts/AVK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBK BIL409 Bristol Tige (rondelle) Lbb-B3.5 NA 28j manip1 prelevt2 82795167 0,03369158 27895 0,000153391 127 0 0 0,033538189 27768 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBKOSW_2_1_C7M86ACXX.IND25_noribo_clean.fastq BIL_BBKOSW_2_2_C7M86ACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBKBBKAligned.sortedByCoord.out.bam JN3_BBK.count G1214_BBK.count BBK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBK/counts/BBK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASB BIL318 Bristol Tige (rondelle) Lmb-Nz-T4 NA 14j NA Rep1 73564545 6,52488E-05 48 5,70927E-05 42 0 0 8,1561E-06 6 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASBOSW_2_1_C78PRACXX.IND1_noribo_clean.fastq BIL_ASBOSW_2_2_C78PRACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASB.count G1214_ASB.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASH BIL324 Bristol Tige (rondelle) Lmb-Nz-T4 NA 14j NA rep2 51233612 0,002978513 1526 0,002968754 1521 4 0 9,75922E-06 5 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASHOSW_2_1_C79GFACXX.IND7_noribo_clean.fastq BIL_ASHOSW_2_2_C79GFACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASH.count G1214_ASH.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATP BIL356 Darmor Tige (rondelle) Lmb-JN2 NA 14j manip3 prelevt1 84880356 3,504439826 2974581 3,502785733 2973177 114 40 0,001654093 1404 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATPOSW_8_1_C7LK1ACXX.IND6_noribo_clean.fastq BIL_ATPOSW_8_2_C7LK1ACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATPATPAligned.sortedByCoord.out.bam JN3_ATP.count G1214_ATP.count ATP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATP/counts/ATP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVM BIL373 Darmor Tige (rondelle) Lbb-B3.5 NA 14j manip3 prelevt1 78235210 0,12369111 96770 0,00063782 499 0 0 0,12305329 96271 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVMOSW_3_1_C7LY4ACXX.IND1_noribo_clean.fastq BIL_AVMOSW_3_2_C7LY4ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVMAVMAligned.sortedByCoord.out.bam JN3_AVM.count G1214_AVM.count AVM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVM/counts/AVM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153297 PRJEB21682 Dutreux et al, 2018 ATS BIL359 Darmor Tige (rondelle) Lmb-JN2 NA 14j manip4 prelevt1 73938984 3,927262511 2903778 3,925536764 2902502 88 25 0,001725747 1276 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATSOSW_1_1_C7M24ACXX.IND10_noribo_clean.fastq BIL_ATSOSW_1_2_C7M24ACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATSATSAligned.sortedByCoord.out.bam JN3_ATS.count G1214_ATS.count ATS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATS/counts/ATS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVP BIL375 Darmor Tige (rondelle) Lbb-B3.5 NA 14j manip4 prelevt1 88787760 0,052171606 46322 0,000183584 163 0 0 0,051988022 46159 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVPOSW_4_1_C7LY4ACXX.IND3_noribo_clean.fastq BIL_AVPOSW_4_2_C7LY4ACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVPAVPAligned.sortedByCoord.out.bam JN3_AVP.count G1214_AVP.count AVP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVP/counts/AVP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARS BIL314 darmor Tige (rondelle) Lmb-JN2 NA 14j NA Rep1 84422702 0,444787943 375502 0,444517874 375274 145 42 0,00027007 228 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARSOSW_4_1_C797YACXX.IND21_noribo_clean.fastq BIL_ARSOSW_4_2_C797YACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARS.count G1214_ARS.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153292 PRJEB21682 Dutreux et al, 2018 ASD BIL320 darmor Tige (rondelle) Lmb-JN2 NA 14j NA rep2 67270830 0,264277994 177782 0,264159072 177702 105 69 0,000118922 80 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASDOSW_1_1_C79GFACXX.IND3_noribo_clean.fastq BIL_ASDOSW_1_2_C79GFACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASD.count G1214_ASD.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAL BIL391 Bristol Tige (rondelle) Lmb-JN2 NA 28j manip1 prelevt2 51686632 2,691651489 1391224 2,6904713 1390614 156 79 0,001180189 610 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BALOSW_3_1_C7LWVACXX.IND21_noribo_clean.fastq BIL_BALOSW_3_2_C7LWVACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BALBALAligned.sortedByCoord.out.bam JN3_BAL.count G1214_BAL.count BAL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAL/counts/BAL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810066 PRJEB3908 Gay et al, 2020 BBM BIL411 Bristol Tige (rondelle) Lbb-B3.5 NA 28j manip2 prelevt2 68545838 0,004348915 2981 0,003431281 2352 0 0 0,000917634 629 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBMOSW_3_1_C7M86ACXX.IND1_noribo_clean.fastq BIL_BBMOSW_3_2_C7M86ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBMBBMAligned.sortedByCoord.out.bam JN3_BBM.count G1214_BBM.count BBM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBM/counts/BBM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAM BIL392 Darmor Tige (rondelle) Lmb-JN2 NA 28j manip1 prelevt2 72976023 2,907944161 2122102 2,906508073 2121054 88 25 0,001436088 1048 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAMOSW_3_1_C7LWVACXX.IND22_noribo_clean.fastq BIL_BAMOSW_3_2_C7LWVACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAMBAMAligned.sortedByCoord.out.bam JN3_BAM.count G1214_BAM.count BAM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAM/counts/BAM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBE BIL404 Darmor Tige (rondelle) Lmb-Nz-T4 NA 28j manip2 prelevt2 101621702 1,949322793 1980935 1,948277741 1979873 252 0 0,001045052 1062 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBEOSW_8_1_C7LWVACXX.IND6_noribo_clean.fastq BIL_BBEOSW_8_2_C7LWVACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBEBBEAligned.sortedByCoord.out.bam JN3_BBE.count G1214_BBE.count BBE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBE/counts/BBE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBH BIL407 Darmor Tige (rondelle) Lmb-Nz-T4 NA 28j manip3 prelevt2 69579861 2,211615513 1538839 2,210735948 1538227 11 0 0,000879565 612 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBHOSW_5_1_C7M17ACXX.IND10_noribo_clean.fastq BIL_BBHOSW_5_2_C7M17ACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBHBBHAligned.sortedByCoord.out.bam JN3_BBH.count G1214_BBH.count BBH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBH/counts/BBH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVR BIL377 Darmor Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 14j manip2 prelevt1 87961729 0,650487441 572180 0,535589745 471114 2449 791 0,114897696 101066 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVROSW_5_1_C7LY4ACXX.IND5_noribo_clean.fastq BIL_AVROSW_5_2_C7LY4ACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVRAVRAligned.sortedByCoord.out.bam JN3_AVR.count G1214_AVR.count AVR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVR/counts/AVR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVT BIL379 Darmor Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 14j manip3 prelevt1 75107639 1,62453915 1220153 1,102921102 828378 1145 415 0,521618047 391775 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVTOSW_6_1_C7LY4ACXX.IND7_noribo_clean.fastq BIL_AVTOSW_6_2_C7LY4ACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVTAVTAligned.sortedByCoord.out.bam JN3_AVT.count G1214_AVT.count AVT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVT/counts/AVT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAA BIL381 Darmor Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 14j manip4 prelevt1 84615653 0,927550603 784853 0,648578579 548799 839 212 0,278972024 236054 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAAOSW_7_1_C7LY4ACXX.IND9_noribo_clean.fastq BIL_BAAOSW_7_2_C7LY4ACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAABAAAligned.sortedByCoord.out.bam JN3_BAA.count G1214_BAA.count BAA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAA/counts/BAA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153299 PRJEB21682 Dutreux et al, 2018 BBS BIL416 Darmor Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 28j manip1 prelevt2 77350608 1,122885808 868559 1,095297144 847219 124 54 0,027588665 21340 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBSOSW_7_1_C7M17ACXX.IND20_noribo_clean.fastq BIL_BBSOSW_7_2_C7M17ACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBSBBSAligned.sortedByCoord.out.bam JN3_BBS.count G1214_BBS.count BBS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBS/counts/BBS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBV BIL418 Darmor Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 28j manip2 prelevt2 79166742 2,832553094 2242440 2,675417665 2118041 85 32 0,157135429 124399 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBVOSW_8_1_C7M17ACXX.IND22_noribo_clean.fastq BIL_BBVOSW_8_2_C7M17ACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBVBBVAligned.sortedByCoord.out.bam JN3_BBV.count G1214_BBV.count BBV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBV/counts/BBV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BCB BIL420 Darmor Tige (rondelle) Lmb-JN2, Lbb-B3.5 NA 28j manip3 prelevt2 105021256 0,042754202 44901 0,000227573 239 0 0 0,042526629 44662 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCBOSW_5_1_C7M86ACXX.IND4_noribo_clean.fastq BIL_BCBOSW_5_2_C7M86ACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BCBBCBAligned.sortedByCoord.out.bam JN3_BCB.count G1214_BCB.count BCB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BCB/counts/BCB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBB BIL401 Darmor Tige (rondelle) Lmb-Nz-T4 NA 28j manip1 prelevt2 85311821 1,365725155 1165125 1,365105077 1164596 50 0 0,000620078 529 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBBOSW_7_1_C7LWVACXX.IND5_noribo_clean.fastq BIL_BBBOSW_7_2_C7LWVACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBBBBBAligned.sortedByCoord.out.bam JN3_BBB.count G1214_BBB.count BBB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBB/counts/BBB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBL BIL410 Darmor Tige (rondelle) Lbb-B3.5 NA 28j manip1 prelevt2 81603159 0,0058809 4799 0,000316164 258 0 0 0,005564736 4541 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBLOSW_3_1_C7M86ACXX.IND27_noribo_clean.fastq BIL_BBLOSW_3_2_C7M86ACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBLBBLAligned.sortedByCoord.out.bam JN3_BBL.count G1214_BBL.count BBL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBL/counts/BBL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAQ BIL395 Darmor Tige (rondelle) Lmb-JN2 NA 28j manip2 prelevt2 82008459 0,937259411 768632 0,936758243 768221 38 26 0,000501168 411 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAQOSW_4_1_C7LWVACXX.IND25_noribo_clean.fastq BIL_BAQOSW_4_2_C7LWVACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAQBAQAligned.sortedByCoord.out.bam JN3_BAQ.count G1214_BAQ.count BAQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAQ/counts/BAQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBC BIL402 Darmor nain Tige (rondelle) Lmb-Nz-T4 NA 28j manip1 prelevt2 95742719 0,46157348 441923 0,461161961 441529 66 0 0,00041152 394 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBCOSW_7_1_C7CAHACXX.IND27_noribo_clean.fastq BIL_BBCOSW_7_2_C7CAHACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBCBBCAligned.sortedByCoord.out.bam JN3_BBC.count G1214_BBC.count BBC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBC/counts/BBC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBI BIL408 Darmor nain Tige (rondelle) Lmb-Nz-T4 NA 28j manip3 prelevt2 112677541 1,527755207 1721437 1,527268864 1720889 69 0 0,000486344 548 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBIOSW_6_1_C7M17ACXX.IND11_noribo_clean.fastq BIL_BBIOSW_6_2_C7M17ACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBIBBIAligned.sortedByCoord.out.bam JN3_BBI.count G1214_BBI.count BBI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBI/counts/BBI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATM BIL354 Darmor nain Tige (rondelle) Lmb-JN2 NA 14j manip2 prelevt1 72112853 2,8011234 2019970 2,799800474 2019016 171 70 0,001322926 954 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATMOSW_8_1_C7KFEACXX.IND4_noribo_clean.fastq BIL_ATMOSW_8_2_C7KFEACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATMATMAligned.sortedByCoord.out.bam JN3_ATM.count G1214_ATM.count ATM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATM/counts/ATM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBF BIL405 Darmor nain Tige (rondelle) Lmb-Nz-T4 NA 28j manip2 prelevt2 71766542 1,84573753 1324622 1,844798374 1323948 42 0 0,000939156 674 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBFOSW_8_1_C7LWVACXX.IND7_noribo_clean.fastq BIL_BBFOSW_8_2_C7LWVACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBFBBFAligned.sortedByCoord.out.bam JN3_BBF.count G1214_BBF.count BBF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBF/counts/BBF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAD BIL384 Darmor nain Tige (rondelle) NI NA 28j manip1 prelevt2 69420533 0,000829726 576 0,000805237 559 0 0 2,44884E-05 17 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BADOSW_8_1_C7LY4ACXX.IND12_noribo_clean.fastq BIL_BADOSW_8_2_C7LY4ACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BADBADAligned.sortedByCoord.out.bam JN3_BAD.count G1214_BAD.count BAD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAD/counts/BAD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATC BIL345 Darmor nain Tige (rondelle) NI NA 14j manip2 prelevt1 72642295 7,57135E-05 55 6,19474E-05 45 0 0 1,37661E-05 10 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATCOSW_4_1_C7KFEACXX.IND21_noribo_clean.fastq BIL_ATCOSW_4_2_C7KFEACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATCATCAligned.sortedByCoord.out.bam JN3_ATC.count G1214_ATC.count ATC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATC/counts/ATC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAG BIL387 Darmor nain Tige (rondelle) NI NA 28j manip2 prelevt2 71575333 0,104378138 74709 0,104284531 74642 2 0 9,36077E-05 67 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAGOSW_2_1_C7M86ACXX.IND23_noribo_clean.fastq BIL_BAGOSW_2_2_C7M86ACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAGBAGAligned.sortedByCoord.out.bam JN3_BAG.count G1214_BAG.count BAG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAG/counts/BAG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATF BIL348 Darmor nain Tige (rondelle) NI NA 14j manip3 prelevt1 72143799 0,000956423 690 0,000884345 638 0 0 7,20783E-05 52 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATFOSW_5_1_C7KFEACXX.IND25_noribo_clean.fastq BIL_ATFOSW_5_2_C7KFEACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATFATFAligned.sortedByCoord.out.bam JN3_ATF.count G1214_ATF.count ATF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATF/counts/ATF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAK BIL390 Darmor nain Tige (rondelle) NI NA 28j manip3 prelevt2 66634453 0,000223608 149 0,000121559 81 0 0 0,000102049 68 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAKOSW_2_1_C7LWVACXX.IND20_noribo_clean.fastq BIL_BAKOSW_2_2_C7LWVACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAKBAKAligned.sortedByCoord.out.bam JN3_BAK.count G1214_BAK.count BAK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAK/counts/BAK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATI BIL351 Darmor nain Tige (rondelle) NI NA 14j manip4 prelevt1 83619246 0,000956718 800 0,000928016 776 0 0 2,87015E-05 24 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATIOSW_7_1_C7KFEACXX.IND2_noribo_clean.fastq BIL_ATIOSW_7_2_C7KFEACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATIATIAligned.sortedByCoord.out.bam JN3_ATI.count G1214_ATI.count ATI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATI/counts/ATI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAC BIL383 Darmor Tige (rondelle) NI NA 28j manip1 prelevt2 80826807 0,001672712 1352 0,001646731 1331 0 0 2,59815E-05 21 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BACOSW_8_1_C7LY4ACXX.IND11_noribo_clean.fastq BIL_BACOSW_8_2_C7LY4ACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BACBACAligned.sortedByCoord.out.bam JN3_BAC.count G1214_BAC.count BAC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAC/counts/BAC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATB BIL344 Darmor Tige (rondelle) NI NA 14j manip2 prelevt1 68319631 3,80564E-05 26 2,92742E-05 20 0 0 8,78225E-06 6 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATBOSW_8_1_C7KFAACXX.IND20_noribo_clean.fastq BIL_ATBOSW_8_2_C7KFAACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATBATBAligned.sortedByCoord.out.bam JN3_ATB.count G1214_ATB.count ATB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATB/counts/ATB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAF BIL386 Darmor Tige (rondelle) NI NA 28j manip2 prelevt2 91876165 0,001100394 1011 0,001069918 983 0 0 3,04758E-05 28 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAFOSW_1_1_C7LWVACXX.IND14_noribo_clean.fastq BIL_BAFOSW_1_2_C7LWVACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAFBAFAligned.sortedByCoord.out.bam JN3_BAF.count G1214_BAF.count BAF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAF/counts/BAF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATE BIL347 Darmor Tige (rondelle) NI NA 14j manip3 prelevt1 86823086 0,00079472 690 0,000643838 559 0 0 0,000150882 131 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATEOSW_5_1_C7KFEACXX.IND23_noribo_clean.fastq BIL_ATEOSW_5_2_C7KFEACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATEATEAligned.sortedByCoord.out.bam JN3_ATE.count G1214_ATE.count ATE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATE/counts/ATE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAI BIL389 Darmor Tige (rondelle) NI NA 28j manip3 prelevt2 65832575 0,000200509 132 0,000194433 128 0 0 6,07602E-06 4 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAIOSW_2_1_C7LWVACXX.IND19_noribo_clean.fastq BIL_BAIOSW_2_2_C7LWVACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAIBAIAligned.sortedByCoord.out.bam JN3_BAI.count G1214_BAI.count BAI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAI/counts/BAI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATH BIL350 Darmor Tige (rondelle) NI NA 14j manip4 prelevt1 66839668 0,01698243 11351 0,015689785 10487 3 0 0,001292646 864 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATHOSW_6_1_C7KFEACXX.IND1_noribo_clean.fastq BIL_ATHOSW_6_2_C7KFEACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATHATHAligned.sortedByCoord.out.bam JN3_ATH.count G1214_ATH.count ATH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATH/counts/ATH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATQ BIL357 Darmor nain Tige (rondelle) Lmb-JN2 NA 14j manip3 prelevt1 70858521 2,251427178 1595328 2,250104825 1594391 145 40 0,001322353 937 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATQOSW_8_1_C7LK1ACXX.IND7_noribo_clean.fastq BIL_ATQOSW_8_2_C7LK1ACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATQATQAligned.sortedByCoord.out.bam JN3_ATQ.count G1214_ATQ.count ATQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATQ/counts/ATQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ATT BIL360 Darmor nain Tige (rondelle) Lmb-JN2 NA 14j manip4 prelevt1 85879195 1,731460105 1486964 1,730733503 1486340 311 111 0,000726602 624 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATTOSW_2_1_C7M24ACXX.IND11_noribo_clean.fastq BIL_ATTOSW_2_2_C7M24ACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATTATTAligned.sortedByCoord.out.bam JN3_ATT.count G1214_ATT.count ATT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATT/counts/ATT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ART BIL315 darmor Tige (rondelle) Lmb-Nz-T4 NA 14j NA Rep1 85602187 0,197444722 169017 0,197341921 168929 4 0 0,000102801 88 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARTOSW_5_1_C797YACXX.IND22_noribo_clean.fastq BIL_ARTOSW_5_2_C797YACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ART " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ART /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ART JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ART/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ART/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ART.count G1214_ART.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ART/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASE BIL321 darmor Tige (rondelle) Lmb-Nz-T4 NA 14j NA rep2 78773594 0,1377162 108484 0,137636224 108421 171 0 7,9976E-05 63 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASEOSW_7_1_C79GFACXX.IND4_noribo_clean.fastq BIL_ASEOSW_7_2_C79GFACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASE.count G1214_ASE.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAP BIL394 Bristol Tige (rondelle) Lmb-JN2 NA 28j manip2 prelevt2 115331139 1,050632128 1211706 1,050038186 1211021 33 11 0,000593942 685 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAPOSW_8_1_C73PUACXX.IND2_noribo_clean.fastq BIL_BAPOSW_8_2_C73PUACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAPBAPAligned.sortedByCoord.out.bam JN3_BAP.count G1214_BAP.count BAP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAP/counts/BAP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810067 PRJEB3908 Gay et al, 2020 BBP BIL413 Bristol Tige (rondelle) Lbb-B3.5 NA 28j manip3 prelevt2 99311728 0,034077546 33843 0,015845057 15736 23 6 0,018232489 18107 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBPOSW_6_1_C7M17ACXX.IND16_noribo_clean.fastq BIL_BBPOSW_6_2_C7M17ACXX.IND16_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBPBBPAligned.sortedByCoord.out.bam JN3_BBP.count G1214_BBP.count BBP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBP/counts/BBP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAS BIL397 Bristol Tige (rondelle) Lmb-JN2 NA 28j manip3 prelevt2 83536327 1,521983364 1271409 1,521148997 1270712 115 60 0,000834368 697 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BASOSW_3_1_C7TEBACXX.IND1_noribo_clean.fastq BIL_BASOSW_3_2_C7TEBACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BASBASAligned.sortedByCoord.out.bam JN3_BAS.count G1214_BAS.count BAS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAS/counts/BAS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810068 PRJEB3908 Gay et al, 2020 ATV BIL361 Bristol Tige (rondelle) Lmb-Nz-T4 NA 14j manip2 prelevt1 89005212 1,551246235 1380690 1,550674358 1380181 44 0 0,000571877 509 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ATVOSW_2_1_C7M24ACXX.IND12_noribo_clean.fastq BIL_ATVOSW_2_2_C7M24ACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ATV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ATV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATVATVAligned.sortedByCoord.out.bam JN3_ATV.count G1214_ATV.count ATV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ATV/counts/ATV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ATV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVC BIL364 Bristol Tige (rondelle) Lmb-Nz-T4 NA 14j manip3 prelevt1 73837796 1,743168228 1287117 1,742420643 1286565 31 0 0,000747585 552 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVCOSW_4_1_C7M24ACXX.IND15_noribo_clean.fastq BIL_AVCOSW_4_2_C7M24ACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVCAVCAligned.sortedByCoord.out.bam JN3_AVC.count G1214_AVC.count AVC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVC/counts/AVC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153294 PRJEB21682 Dutreux et al, 2018 AVF BIL367 Bristol Tige (rondelle) Lmb-Nz-T4 NA 14j manip4 prelevt1 69382901 1,542681244 1070357 1,541933221 1069838 39 0 0,000748023 519 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVFOSW_5_1_C7M24ACXX.IND19_noribo_clean.fastq BIL_AVFOSW_5_2_C7M24ACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVFAVFAligned.sortedByCoord.out.bam JN3_AVF.count G1214_AVF.count AVF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVF/counts/AVF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBN BIL412 Darmor Tige (rondelle) Lbb-B3.5 NA 28j manip2 prelevt2 81203726 0,007603099 6174 0,000944538 767 0 0 0,006658561 5407 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBNOSW_4_1_C7M86ACXX.IND2_noribo_clean.fastq BIL_BBNOSW_4_2_C7M86ACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBNBBNAligned.sortedByCoord.out.bam JN3_BBN.count G1214_BBN.count BBN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBN/counts/BBN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAT BIL398 Darmor Tige (rondelle) Lmb-JN2 NA 28j manip3 prelevt2 94368754 0,518314568 489127 0,518085679 488911 53 14 0,000228889 216 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BATOSW_6_1_C7LWVACXX.IND2_noribo_clean.fastq BIL_BATOSW_6_2_C7LWVACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BATBATAligned.sortedByCoord.out.bam JN3_BAT.count G1214_BAT.count BAT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAT/counts/BAT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BBQ BIL414 Darmor Tige (rondelle) Lbb-B3.5 NA 28j manip3 prelevt2 85982013 0,037110087 31908 0,000437301 376 0 0 0,036672786 31532 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BBQOSW_4_1_C7M86ACXX.IND3_noribo_clean.fastq BIL_BBQOSW_4_2_C7M86ACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BBQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BBQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBQBBQAligned.sortedByCoord.out.bam JN3_BBQ.count G1214_BBQ.count BBQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BBQ/counts/BBQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BBQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAN BIL393 Darmor nain Tige (rondelle) Lmb-JN2 NA 28j manip1 prelevt2 86349218 1,177618076 1016864 1,177092304 1016410 218 93 0,000525772 454 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BANOSW_4_1_C7LWVACXX.IND23_noribo_clean.fastq BIL_BANOSW_4_2_C7LWVACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BANBANAligned.sortedByCoord.out.bam JN3_BAN.count G1214_BAN.count BAN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAN/counts/BAN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAV BIL399 Darmor nain Tige (rondelle) Lmb-JN2 NA 28j manip3 prelevt2 90703749 0,225376572 204425 0,225207891 204272 120 54 0,000168681 153 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAVOSW_6_1_C7LWVACXX.IND3_noribo_clean.fastq BIL_BAVOSW_6_2_C7LWVACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAVBAVAligned.sortedByCoord.out.bam JN3_BAV.count G1214_BAV.count BAV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAV/counts/BAV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BAR BIL396 Darmor nain Tige (rondelle) Lmb-JN2 NA 28j manip2 prelevt2 78003968 0,829302684 646889 0,8289386 646605 56 15 0,000364084 284 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BAROSW_3_1_C7TEBACXX.IND27_noribo_clean.fastq BIL_BAROSW_3_2_C7TEBACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BAR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BAR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BARBARAligned.sortedByCoord.out.bam JN3_BAR.count G1214_BAR.count BAR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/BAR/counts/BAR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BAR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVB BIL363 Darmor nain Tige (rondelle) Lmb-Nz-T4 NA 14j manip2 prelevt1 66651257 1,409779864 939636 1,40920373 939252 35 0 0,000576133 384 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVBOSW_3_1_C7M24ACXX.IND14_noribo_clean.fastq BIL_AVBOSW_3_2_C7M24ACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVBAVBAligned.sortedByCoord.out.bam JN3_AVB.count G1214_AVB.count AVB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVB/counts/AVB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVE BIL366 Darmor nain Tige (rondelle) Lmb-Nz-T4 NA 14j manip3 prelevt1 88443662 0,956793263 846223 0,956249414 845742 113 0 0,000543849 481 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVEOSW_5_1_C7M24ACXX.IND18_noribo_clean.fastq BIL_AVEOSW_5_2_C7M24ACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVEAVEAligned.sortedByCoord.out.bam JN3_AVE.count G1214_AVE.count AVE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVE/counts/AVE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVH BIL369 Darmor nain Tige (rondelle) Lmb-Nz-T4 NA 14j manip4 prelevt1 86813997 0,640865551 556361 0,64052344 556064 57 0 0,000342111 297 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVHOSW_6_1_C7M24ACXX.IND21_noribo_clean.fastq BIL_AVHOSW_6_2_C7M24ACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVHAVHAligned.sortedByCoord.out.bam JN3_AVH.count G1214_AVH.count AVH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVH/counts/AVH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVA BIL362 Darmor Tige (rondelle) Lmb-Nz-T4 NA 14j manip2 prelevt1 93864300 1,304173152 1224153 1,30364473 1223657 52 0 0,000528422 496 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVAOSW_3_1_C7M24ACXX.IND13_noribo_clean.fastq BIL_AVAOSW_3_2_C7M24ACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVAAVAAligned.sortedByCoord.out.bam JN3_AVA.count G1214_AVA.count AVA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVA/counts/AVA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVD BIL365 Darmor Tige (rondelle) Lmb-Nz-T4 NA 14j manip3 prelevt1 64562479 1,360830646 878586 1,360342746 878271 56 0 0,000487899 315 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVDOSW_4_1_C7M24ACXX.IND16_noribo_clean.fastq BIL_AVDOSW_4_2_C7M24ACXX.IND16_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVDAVDAligned.sortedByCoord.out.bam JN3_AVD.count G1214_AVD.count AVD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVD/counts/AVD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AVG BIL368 Darmor Tige (rondelle) Lmb-Nz-T4 NA 14j manip4 prelevt1 77226896 1,065953758 823203 1,065492779 822847 58 0 0,000460979 356 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AVGOSW_6_1_C7M24ACXX.IND20_noribo_clean.fastq BIL_AVGOSW_6_2_C7M24ACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AVG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AVG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVGAVGAligned.sortedByCoord.out.bam JN3_AVG.count G1214_AVG.count AVG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AVG/counts/AVG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AVG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153295 PRJEB21682 Dutreux et al, 2018 ABA BIL032 Bristol nécrose du collet NA NA 20/11/2013 Rep1 87984673 0,002215159 1949 0,002012851 1771 1 0 0,000202308 178 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABAOSW_3_1_C78F0ACXX.IND2_noribo_clean.fastq BIL_ABAOSW_3_2_C78F0ACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABAABAAligned.sortedByCoord.out.bam JN3_ABA.count G1214_ABA.count ABA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABA/counts/ABA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810022 PRJEB3908 Gay et al, 2020 ABQ BIL046 Bristol nécrose du collet NA NA 20/11/2013 rep2 82816101 0,002165038 1793 0,001392241 1153 0 0 0,000772797 640 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABQOSW_4_1_C78WCACXX.IND20_noribo_clean.fastq BIL_ABQOSW_4_2_C78WCACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABQABQAligned.sortedByCoord.out.bam JN3_ABQ.count G1214_ABQ.count ABQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABQ/counts/ABQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810029 PRJEB3908 Gay et al, 2020 ACK BIL060 Bristol nécrose du collet NA NA 20/11/2013 rep3 100826335 0,003186667 3213 0,002935741 2960 0 0 0,000250927 253 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACKOSW_5_1_C78ERACXX.IND10_noribo_clean.fastq BIL_ACKOSW_5_2_C78ERACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACKACKAligned.sortedByCoord.out.bam JN3_ACK.count G1214_ACK.count ACK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACK/counts/ACK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810036 PRJEB3908 Gay et al, 2020 ABS BIL048 Bristol nécrose du collet NA NA 18/12/2013 rep2 76527108 0,003519014 2693 0,003461518 2649 2 1 5,7496E-05 44 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABSOSW_5_1_C78WCACXX.IND22_noribo_clean.fastq BIL_ABSOSW_5_2_C78WCACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABSABSAligned.sortedByCoord.out.bam JN3_ABS.count G1214_ABS.count ABS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABS/counts/ABS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810030 PRJEB3908 Gay et al, 2020 ACM BIL062 Bristol nécrose du collet NA NA 18/12/2013 rep3 83878501 0,001633315 1370 0,001415142 1187 0 0 0,000218173 183 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACMOSW_6_1_C78ERACXX.IND12_noribo_clean.fastq BIL_ACMOSW_6_2_C78ERACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACMACMAligned.sortedByCoord.out.bam JN3_ACM.count G1214_ACM.count ACM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACM/counts/ACM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810037 PRJEB3908 Gay et al, 2020 ABC BIL034 Bristol nécrose du collet NA NA 18/12/2013 Rep1 99360000 0,004377013 4349 0,004231079 4204 0 0 0,000145934 145 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABCOSW_4_1_C741LACXX.IND4_noribo_clean.fastq BIL_ABCOSW_4_2_C741LACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABCABCAligned.sortedByCoord.out.bam JN3_ABC.count G1214_ABC.count ABC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABC/counts/ABC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810023 PRJEB3908 Gay et al, 2020 ABE BIL036 Bristol nécrose du collet NA NA 13/02/2014 Rep1 94016675 0,006381847 6000 0,005755362 5411 37 11 0,000626485 589 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABEOSW_5_1_C741LACXX.IND6_noribo_clean.fastq BIL_ABEOSW_5_2_C741LACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABEABEAligned.sortedByCoord.out.bam JN3_ABE.count G1214_ABE.count ABE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABE/counts/ABE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810024 PRJEB3908 Gay et al, 2020 ABV BIL050 Bristol nécrose du collet NA NA 13/02/2014 rep2 84332713 0,035129903 29626 0,028380446 23934 67 27 0,006749457 5692 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABVOSW_6_1_C78WCACXX.IND25_noribo_clean.fastq BIL_ABVOSW_6_2_C78WCACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABVABVAligned.sortedByCoord.out.bam JN3_ABV.count G1214_ABV.count ABV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABV/counts/ABV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810031 PRJEB3908 Gay et al, 2020 ACP BIL064 Bristol nécrose du collet NA NA 13/02/2014 rep3 80489018 0,006679172 5376 0,002707202 2179 4 0 0,00397197 3197 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACPOSW_7_1_C78ERACXX.IND14_noribo_clean.fastq BIL_ACPOSW_7_2_C78ERACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACPACPAligned.sortedByCoord.out.bam JN3_ACP.count G1214_ACP.count ACP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACP/counts/ACP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810038 PRJEB3908 Gay et al, 2020 ABG BIL038 Bristol nécrose du collet NA NA 13/03/2014 Rep1 83911444 0,092574977 77681 0,083137647 69762 480 149 0,00943733 7919 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABGOSW_6_1_C741LACXX.IND8_noribo_clean.fastq BIL_ABGOSW_6_2_C741LACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABGABGAligned.sortedByCoord.out.bam JN3_ABG.count G1214_ABG.count ABG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABG/counts/ABG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810025 PRJEB3908 Gay et al, 2020 ACB BIL052 Bristol nécrose du collet NA NA 13/03/2014 rep2 75821420 3,249659529 2463938 3,111494087 2359179 102 34 0,138165442 104759 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACBOSW_7_1_C78WCACXX.IND1_noribo_clean.fastq BIL_ACBOSW_7_2_C78WCACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACBACBAligned.sortedByCoord.out.bam JN3_ACB.count G1214_ACB.count ACB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACB/counts/ACB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810032 PRJEB3908 Gay et al, 2020 ACR BIL066 Bristol nécrose du collet NA NA 13/03/2014 rep3 95210823 0,085628921 81528 0,080873159 77000 283 39 0,004755762 4528 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACROSW_8_1_C78ERACXX.IND16_noribo_clean.fastq BIL_ACROSW_8_2_C78ERACXX.IND16_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACRACRAligned.sortedByCoord.out.bam JN3_ACR.count G1214_ACR.count ACR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACR/counts/ACR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810039 PRJEB3908 Gay et al, 2020 ABI BIL040 Bristol nécrose du collet NA NA 04/04/2014 Rep1 77164785 0,571638993 441104 0,507101782 391304 289 199 0,064537211 49800 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABIOSW_5_1_C73U8ACXX.IND10_noribo_clean.fastq BIL_ABIOSW_5_2_C73U8ACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABIABIAligned.sortedByCoord.out.bam JN3_ABI.count G1214_ABI.count ABI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABI/counts/ABI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810026 PRJEB3908 Gay et al, 2020 ACD BIL054 Bristol nécrose du collet NA NA 04/04/2014 rep2 74898729 0,170223182 127495 0,152516607 114233 139 49 0,017706576 13262 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACDOSW_8_1_C78WCACXX.IND3_noribo_clean.fastq BIL_ACDOSW_8_2_C78WCACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACDACDAligned.sortedByCoord.out.bam JN3_ACD.count G1214_ACD.count ACD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACD/counts/ACD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810033 PRJEB3908 Gay et al, 2020 ACT BIL068 Bristol nécrose du collet NA NA 04/04/2014 rep3 78205456 0,736940911 576328 0,731544868 572108 267 97 0,005396043 4220 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACTOSW_2_1_C78ECACXX.IND19_noribo_clean.fastq BIL_ACTOSW_2_2_C78ECACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACTACTAligned.sortedByCoord.out.bam JN3_ACT.count G1214_ACT.count ACT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACT/counts/ACT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810040 PRJEB3908 Gay et al, 2020 ABL BIL042 Bristol nécrose du collet NA NA 15/05/2014 Rep1 83230039 5,715900241 4757346 4,955224159 4124235 98 69 0,760676082 633111 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABLOSW_6_1_C73U8ACXX.IND12_noribo_clean.fastq BIL_ABLOSW_6_2_C73U8ACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABLABLAligned.sortedByCoord.out.bam JN3_ABL.count G1214_ABL.count ABL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABL/counts/ABL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810027 PRJEB3908 Gay et al, 2020 ACF BIL056 Bristol nécrose du collet NA NA 15/05/2014 rep2 89796051 1,756910223 1577636 1,640402873 1473017 105 78 0,116507351 104619 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACFOSW_3_1_C78ERACXX.IND5_noribo_clean.fastq BIL_ACFOSW_3_2_C78ERACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACFACFAligned.sortedByCoord.out.bam JN3_ACF.count G1214_ACF.count ACF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACF/counts/ACF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810034 PRJEB3908 Gay et al, 2020 ADA BIL070 Bristol nécrose du collet NA NA 15/05/2014 rep3 78006587 10,40111779 8113557 10,3655849 8085839 87 53 0,035532897 27718 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADAOSW_3_1_C78ECACXX.IND21_noribo_clean.fastq BIL_ADAOSW_3_2_C78ECACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADAADAAligned.sortedByCoord.out.bam JN3_ADA.count G1214_ADA.count ADA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADA/counts/ADA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810041 PRJEB3908 Gay et al, 2020 ABN BIL044 Bristol nécrose du collet NA NA 08/07/2014 Rep1 57520239 39,95149429 22980195 38,24589115 21999128 68 148 1,705603136 981067 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABNOSW_3_1_C78WCACXX.IND18_noribo_clean.fastq BIL_ABNOSW_3_2_C78WCACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABNABNAligned.sortedByCoord.out.bam JN3_ABN.count G1214_ABN.count ABN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABN/counts/ABN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810028 PRJEB3908 Gay et al, 2020 ACH BIL058 Bristol nécrose du collet NA NA 08/07/2014 rep2 71290361 36,46642777 25997048 30,44141409 21701794 17 54 6,025013676 4295254 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACHOSW_4_1_C78ERACXX.IND7_noribo_clean.fastq BIL_ACHOSW_4_2_C78ERACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACHACHAligned.sortedByCoord.out.bam JN3_ACH.count G1214_ACH.count ACH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACH/counts/ACH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810035 PRJEB3908 Gay et al, 2020 ADC BIL072 Bristol nécrose du collet NA NA 08/07/2014 rep3 53866174 40,42371378 21774708 39,69537543 21382380 19 43 0,728338345 392328 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADCOSW_4_1_C78ECACXX.IND23_noribo_clean.fastq BIL_ADCOSW_4_2_C78ECACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADCADCAligned.sortedByCoord.out.bam JN3_ADC.count G1214_ADC.count ADC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADC/counts/ADC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810042 PRJEB3908 Gay et al, 2020 AAV BIL031 Darmor nain nécrose du collet NA NA 20/11/13 Rep1 75789810 0,000771872 585 0,000753399 571 0 0 1,84721E-05 14 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AAVOSW_3_1_C78F0ACXX.IND1_noribo_clean.fastq BIL_AAVOSW_3_2_C78F0ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AAV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AAV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AAV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AAV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AAV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AAVAAVAligned.sortedByCoord.out.bam JN3_AAV.count G1214_AAV.count AAV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/AAV/counts/AAV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AAV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ABP BIL045 Darmor nain nécrose du collet NA NA 20/11/13 rep2 80460359 0,010689736 8601 0,010316882 8301 39 21 0,000372854 300 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABPOSW_3_1_C78WCACXX.IND19_noribo_clean.fastq BIL_ABPOSW_3_2_C78WCACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABPABPAligned.sortedByCoord.out.bam JN3_ABP.count G1214_ABP.count ABP_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABP/counts/ABP_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ACI BIL059 Darmor nain nécrose du collet NA NA 20/11/13 rep3 71155283 0,005892746 4193 0,004960981 3530 0 1 0,000931765 663 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACIOSW_4_1_C78ERACXX.IND9_noribo_clean.fastq BIL_ACIOSW_4_2_C78ERACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACIACIAligned.sortedByCoord.out.bam JN3_ACI.count G1214_ACI.count ACI_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACI/counts/ACI_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ABB BIL033 Darmor nain nécrose du collet NA NA 18/12/13 Rep1 94713184 0,00051524 488 0,00046456 440 0 0 5,06793E-05 48 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABBOSW_4_1_C741LACXX.IND3_noribo_clean.fastq BIL_ABBOSW_4_2_C741LACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABBABBAligned.sortedByCoord.out.bam JN3_ABB.count G1214_ABB.count ABB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABB/counts/ABB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ABR BIL047 Darmor nain nécrose du collet NA NA 18/12/13 rep2 76943024 0,000959151 738 0,000792794 610 0 0 0,000166357 128 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABROSW_4_1_C78WCACXX.IND21_noribo_clean.fastq BIL_ABROSW_4_2_C78WCACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABRABRAligned.sortedByCoord.out.bam JN3_ABR.count G1214_ABR.count ABR_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABR/counts/ABR_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ACL BIL061 Darmor nain nécrose du collet NA NA 18/12/13 rep3 85556545 0,000773757 662 0,000480384 411 0 0 0,000293373 251 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACLOSW_5_1_C78ERACXX.IND11_noribo_clean.fastq BIL_ACLOSW_5_2_C78ERACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACLACLAligned.sortedByCoord.out.bam JN3_ACL.count G1214_ACL.count ACL_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACL/counts/ACL_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ABT BIL049 Darmor nain nécrose du collet NA NA 13/2/14 rep2 86235514 0,001963228 1693 0,001528373 1318 2 0 0,000434856 375 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABTOSW_5_1_C78WCACXX.IND23_noribo_clean.fastq BIL_ABTOSW_5_2_C78WCACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABTABTAligned.sortedByCoord.out.bam JN3_ABT.count G1214_ABT.count ABT_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABT/counts/ABT_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ACN BIL063 Darmor nain nécrose du collet NA NA 13/2/14 rep3 87993247 0,001400107 1232 0,001227367 1080 4 2 0,000172741 152 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACNOSW_6_1_C78ERACXX.IND13_noribo_clean.fastq BIL_ACNOSW_6_2_C78ERACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACNACNAligned.sortedByCoord.out.bam JN3_ACN.count G1214_ACN.count ACN_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACN/counts/ACN_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ABD BIL035 Darmor nain nécrose du collet NA NA 13/2/14 92384913 0,002570766 2375 0,0008562 791 0 0 0,001714566 1584 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABDOSW_5_1_C741LACXX.IND5_noribo_clean.fastq BIL_ABDOSW_5_2_C741LACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABDABDAligned.sortedByCoord.out.bam JN3_ABD.count G1214_ABD.count ABD_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABD/counts/ABD_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ABF BIL037 Darmor nain nécrose du collet NA NA 13/3/14 Rep1 89417600 0,002089074 1868 0,001694297 1515 3 0 0,000394777 353 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABFOSW_6_1_C741LACXX.IND7_noribo_clean.fastq BIL_ABFOSW_6_2_C741LACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABFABFAligned.sortedByCoord.out.bam JN3_ABF.count G1214_ABF.count ABF_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABF/counts/ABF_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ACA BIL051 Darmor nain nécrose du collet NA NA 13/3/14 rep2 65500104 0,003019843 1978 0,001508395 988 0 0 0,001511448 990 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACAOSW_6_1_C78WCACXX.IND27_noribo_clean.fastq BIL_ACAOSW_6_2_C78WCACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACAACAAligned.sortedByCoord.out.bam JN3_ACA.count G1214_ACA.count ACA_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACA/counts/ACA_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ACQ BIL065 Darmor nain nécrose du collet NA NA 13/3/14 rep3 103787078 0,023024061 23896 0,021554706 22371 1 0 0,001469354 1525 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACQOSW_7_1_C78ERACXX.IND15_noribo_clean.fastq BIL_ACQOSW_7_2_C78ERACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACQACQAligned.sortedByCoord.out.bam JN3_ACQ.count G1214_ACQ.count ACQ_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACQ/counts/ACQ_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ABH BIL039 Darmor nain nécrose du collet NA NA 4/4/14 Rep1 73586554 0,294901702 217008 0,000982516 723 0 0 0,293919185 216285 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABHOSW_4_1_C73U8ACXX.IND9_noribo_clean.fastq BIL_ABHOSW_4_2_C73U8ACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABHABHAligned.sortedByCoord.out.bam JN3_ABH.count G1214_ABH.count ABH_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABH/counts/ABH_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ACC BIL053 Darmor nain nécrose du collet NA NA 4/4/14 rep2 81571439 0,026726266 21801 0,024192291 19734 52 14 0,002533975 2067 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACCOSW_7_1_C78WCACXX.IND2_noribo_clean.fastq BIL_ACCOSW_7_2_C78WCACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACCACCAligned.sortedByCoord.out.bam JN3_ACC.count G1214_ACC.count ACC_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACC/counts/ACC_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ACS BIL067 Darmor nain nécrose du collet NA NA 4/4/14 rep3 89304132 0,178313138 159241 0,175028855 156308 9 6 0,003284283 2933 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACSOSW_8_1_C78ERACXX.IND18_noribo_clean.fastq BIL_ACSOSW_8_2_C78ERACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACSACSAligned.sortedByCoord.out.bam JN3_ACS.count G1214_ACS.count ACS_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACS/counts/ACS_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ABK BIL041 Darmor nain nécrose du collet NA NA 15/5/14 Rep1 97121505 0,028795888 27967 0,026151778 25399 69 28 0,002644111 2568 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABKOSW_5_1_C73U8ACXX.IND11_noribo_clean.fastq BIL_ABKOSW_5_2_C73U8ACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABKABKAligned.sortedByCoord.out.bam JN3_ABK.count G1214_ABK.count ABK_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABK/counts/ABK_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ACE BIL055 Darmor nain nécrose du collet NA NA 15/5/14 rep2 78635382 0,005900652 4640 0,003906638 3072 4 0 0,001994013 1568 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACEOSW_8_1_C78WCACXX.IND4_noribo_clean.fastq BIL_ACEOSW_8_2_C78WCACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACEACEAligned.sortedByCoord.out.bam JN3_ACE.count G1214_ACE.count ACE_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACE/counts/ACE_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ACV BIL069 Darmor nain nécrose du collet NA NA 15/5/14 rep3 95374717 0,097869753 93343 0,089670515 85523 108 74 0,008199238 7820 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACVOSW_2_1_C78ECACXX.IND20_noribo_clean.fastq BIL_ACVOSW_2_2_C78ECACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACVACVAligned.sortedByCoord.out.bam JN3_ACV.count G1214_ACV.count ACV_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACV/counts/ACV_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ABM BIL043 Darmor nain nécrose du collet NA NA 8/7/14 Rep1 101506362 45,32196908 46004682 37,74346282 38312016 79 33 7,578506262 7692666 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ABMOSW_6_1_C73U8ACXX.IND13_noribo_clean.fastq BIL_ABMOSW_6_2_C73U8ACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ABM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ABM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABMABMAligned.sortedByCoord.out.bam JN3_ABM.count G1214_ABM.count ABM_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ABM/counts/ABM_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ABM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153276 PRJEB21682 Dutreux et al, 2018 ACG BIL057 Darmor nain nécrose du collet NA NA 8/7/14 rep2 74830570 68,42823595 51205239 57,7136149 43187427 10 22 10,71462104 8017812 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ACGOSW_3_1_C78ERACXX.IND6_noribo_clean.fastq BIL_ACGOSW_3_2_C78ERACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ACG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ACG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACGACGAligned.sortedByCoord.out.bam JN3_ACG.count G1214_ACG.count ACG_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ACG/counts/ACG_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ACG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ADB BIL071 Darmor nain nécrose du collet NA NA 8/7/14 rep3 90943882 58,13200057 52867498 55,46641169 50443308 18 99 2,665588874 2424190 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ADBOSW_3_1_C78ECACXX.IND22_noribo_clean.fastq BIL_ADBOSW_3_2_C78ECACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ADB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ADB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADBADBAligned.sortedByCoord.out.bam JN3_ADB.count G1214_ADB.count ADB_counts /ccc/scratch/cont007/fg0037/vernadej/ToStore/Mappings/ADB/counts/ADB_counts /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ADB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AAS BIL001 CV. Alpaga résidus de culture NA NA 11/07/2013 rep1 G2:4 71763616 12,78039278 9171672 12,70507885 9117624 211 61 0,075313931 54048 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AASOSW_7_1_C7CAFACXX.IND21_noribo_clean.fastq BIL_AASOSW_7_2_C7CAFACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AAS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AAS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AAS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AAS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AAS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AAS.count G1214_AAS.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AAS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810074 PRJEB3908 Gay et al, 2020 BCI BIL008 CV. Alpaga résidus de culture NA NA 11/07/2013 rep2 G2:4 71229711 11,44966459 8155563 11,39049827 8113419 192 45 0,059166322 42144 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCIOSW_8_1_C7CAHACXX.IND2_noribo_clean.fastq BIL_BCIOSW_8_2_C7CAHACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCI.count G1214_BCI.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810020 PRJEB3908 Gay et al, 2020 BCK BIL009 CV. Alpaga résidus de culture NA NA 11/07/2013 rep2 G2:5 56628514 48,05541604 27213068 46,96449919 26595298 15 9 1,090916848 617770 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCKOSW_2_1_C7CABACXX.IND3_noribo_clean.fastq BIL_BCKOSW_2_2_C7CABACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCK.count G1214_BCK.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810075 PRJEB3908 Gay et al, 2020 BCR BIL016 CV. Alpaga résidus de culture NA NA 11/07/2013 rep3 G2:4 69245196 17,57248691 12168103 17,51919945 12131204 78 41 0,053287451 36899 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCROSW_8_1_C7M24ACXX.IND10_noribo_clean.fastq BIL_BCROSW_8_2_C7M24ACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCR.count G1214_BCR.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810080 PRJEB3908 Gay et al, 2020 BCS BIL017 CV. Alpaga résidus de culture NA NA 11/07/2013 rep3 G2:5 69724631 40,40168961 28169929 40,16109745 28002177 68 9 0,240592166 167752 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCSOSW_8_1_C7M24ACXX.IND25_noribo_clean.fastq BIL_BCSOSW_8_2_C7M24ACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCS.count G1214_BCS.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810081 PRJEB3908 Gay et al, 2020 BDE BIL024 CV. Alpaga résidus de culture NA NA 11/07/2013 rep4 G2:4 58144353 17,0328699 9903652 16,98337584 9874874 92 38 0,049494058 28778 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDEOSW_4_1_C7LV4ACXX.IND14_noribo_clean.fastq BIL_BDEOSW_4_2_C7LV4ACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDE.count G1214_BDE.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810087 PRJEB3908 Gay et al, 2020 BDF BIL025 CV. Alpaga résidus de culture NA NA 11/07/2013 rep4 G2:5 68004438 18,17764305 12361604 18,00884672 12246815 28 18 0,168796336 114789 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDFOSW_4_1_C7LV4ACXX.IND4_noribo_clean.fastq BIL_BDFOSW_4_2_C7LV4ACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDF.count G1214_BDF.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810088 PRJEB3908 Gay et al, 2020 BCC BIL002 CV. Alpaga résidus de culture NA NA 29/07/2013 rep1 G2:5 81345640 45,97832656 37401364 45,65808075 37140858 11 6 0,320245805 260506 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCCOSW_3_1_C79GFACXX.IND15_noribo_clean.fastq BIL_BCCOSW_3_2_C79GFACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCC.count G1214_BCC.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BCL BIL010 CV. Alpaga résidus de culture NA NA 29/07/2013 rep2 G2:5 41731462 73,50529919 30674836 73,22542402 30558040 0 0 0,279875169 116796 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCLOSW_6_1_C79GFACXX.IND22_noribo_clean.fastq BIL_BCLOSW_6_2_C79GFACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCL.count G1214_BCL.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BCT BIL018 CV. Alpaga résidus de culture NA NA 29/07/2013 rep3 G2:5 67506002 74,17755683 50074303 73,88743004 49878450 0 0 0,290126795 195853 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCTOSW_1_1_C7LV4ACXX.IND11_noribo_clean.fastq BIL_BCTOSW_1_2_C7LV4ACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCT.count G1214_BCT.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153277 PRJEB21682 Dutreux et al, 2018 BCD BIL003 CV.Alpaga résidus de culture NA NA 12/09/2013 rep1 G2:5 70842135 58,79387599 41650837 58,35137521 41337360 4 9 0,44250078 313477 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCDOSW_4_1_C79GFACXX.IND16_noribo_clean.fastq BIL_BCDOSW_4_2_C79GFACXX.IND16_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCD.count G1214_BCD.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810069 PRJEB3908 Gay et al, 2020 BCM BIL011 CV.Alpaga résidus de culture NA NA 12/09/2013 rep2 G2:5 40800901 56,66171931 23118492 56,19499922 22928066 5 18 0,466720085 190426 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCMOSW_3_1_C7CABACXX.IND4_noribo_clean.fastq BIL_BCMOSW_3_2_C7CABACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCM.count G1214_BCM.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810076 PRJEB3908 Gay et al, 2020 BCV BIL019 CV.Alpaga résidus de culture NA NA 12/09/2013 rep3 G2:5 69228233 39,79765163 27551211 39,75127171 27519103 28 58 0,046379921 32108 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCVOSW_1_1_C7LV4ACXX.IND12_noribo_clean.fastq BIL_BCVOSW_1_2_C7LV4ACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCV.count G1214_BCV.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810082 PRJEB3908 Gay et al, 2020 BDG BIL026 CV.Alpaga résidus de culture NA NA 12/09/2013 rep4 G2:5 51217521 40,89197132 20943854 40,84823824 20921455 24 39 0,043733081 22399 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDGOSW_5_1_C7LV4ACXX.IND5_noribo_clean.fastq BIL_BDGOSW_5_2_C7LV4ACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDG.count G1214_BDG.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810089 PRJEB3908 Gay et al, 2020 BCE BIL004 CV.Alpaga résidus de culture NA NA 28/11/2013 rep1 G2:4 73397234 10,23727543 7513877 8,037276991 5899139 3 4 2,199998436 1614738 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCEOSW_4_1_C79GFACXX.IND18_noribo_clean.fastq BIL_BCEOSW_4_2_C79GFACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCE.count G1214_BCE.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810070 PRJEB3908 Gay et al, 2020 BCN BIL012 CV.Alpaga résidus de culture NA NA 28/11/2013 rep2 G2:4 57477869 10,14496205 5831108 8,177517855 4700263 9 11 1,9674442 1130845 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCNOSW_3_1_C7CABACXX.IND9_noribo_clean.fastq BIL_BCNOSW_3_2_C7CABACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCN.count G1214_BCN.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810077 PRJEB3908 Gay et al, 2020 BDA BIL020 CV.Alpaga résidus de culture NA NA 28/11/2013 rep3 G2:4 53731293 17,0641008 9168762 17,01111306 9140291 2 6 0,052987744 28471 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDAOSW_2_1_C7LV4ACXX.IND1_noribo_clean.fastq BIL_BDAOSW_2_2_C7LV4ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDA.count G1214_BDA.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810083 PRJEB3908 Gay et al, 2020 BDH BIL027 CV.Alpaga résidus de culture NA NA 28/11/2013 rep4 G2:4 68440252 16,2658577 11132394 16,19328053 11082722 1 10 0,072577173 49672 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDHOSW_5_1_C7LV4ACXX.IND6_noribo_clean.fastq BIL_BDHOSW_5_2_C7LV4ACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDH.count G1214_BDH.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810090 PRJEB3908 Gay et al, 2020 BCF BIL005 CV.Alpaga résidus de culture NA NA 12/02/2014 rep1 66886895 9,591596381 6415521 9,562886721 6396318 4 11 0,02870966 19203 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCFOSW_5_1_C79GFACXX.IND19_noribo_clean.fastq BIL_BCFOSW_5_2_C79GFACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCF.count G1214_BCF.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810071 PRJEB3908 Gay et al, 2020 BCP BIL013 CV.Alpaga résidus de culture NA NA 12/02/2014 rep2 56279678 22,54848366 12690214 22,5306815 12680195 2 12 0,017802163 10019 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCPOSW_8_1_C79GFACXX.IND9_noribo_clean.fastq BIL_BCPOSW_8_2_C79GFACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCP.count G1214_BCP.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810078 PRJEB3908 Gay et al, 2020 BDB BIL021 CV.Alpaga résidus de culture NA NA 12/02/2014 rep3 78268131 17,38986331 13610721 17,35788734 13585694 1 12 0,031975978 25027 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDBOSW_2_1_C7LV4ACXX.IND2_noribo_clean.fastq BIL_BDBOSW_2_2_C7LV4ACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDB.count G1214_BDB.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810084 PRJEB3908 Gay et al, 2020 BDI BIL028 CV.Alpaga résidus de culture NA NA 12/02/2014 rep4 68785882 17,1946316 11827479 17,16435503 11806653 4 8 0,030276562 20826 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDIOSW_6_1_C7LV4ACXX.IND7_noribo_clean.fastq BIL_BDIOSW_6_2_C7LV4ACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDI.count G1214_BDI.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810091 PRJEB3908 Gay et al, 2020 BCG BIL006 CV.Alpaga résidus de culture NA NA 10/04/2014 rep1 81610634 0,737104922 601556 0,702402336 573235 0 0 0,034702585 28321 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCGOSW_5_1_C79GFACXX.IND20_noribo_clean.fastq BIL_BCGOSW_5_2_C79GFACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCG.count G1214_BCG.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810072 PRJEB3908 Gay et al, 2020 AAT BIL014 CV.Alpaga résidus de culture NA NA 10/04/2014 rep2 92844039 0,762118934 707582 0,725271118 673371 0 2 0,036847815 34211 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AATOSW_4_1_C73U8ACXX.IND1_noribo_clean.fastq BIL_AATOSW_4_2_C73U8ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AAT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AAT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AAT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AAT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AAT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AAT.count G1214_AAT.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AAT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810021 PRJEB3908 Gay et al, 2020 BDC BIL022 CV.Alpaga résidus de culture NA NA 10/04/2014 rep3 72368348 0,265535977 192164 0,193612268 140114 0 0 0,071923709 52050 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDCOSW_3_1_C7LV4ACXX.IND13_noribo_clean.fastq BIL_BDCOSW_3_2_C7LV4ACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDC.count G1214_BDC.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810085 PRJEB3908 Gay et al, 2020 BDK BIL029 CV.Alpaga résidus de culture NA NA 10/04/2014 rep4 80616073 0,252571221 203613 0,181945107 146677 0 0 0,070626114 56936 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDKOSW_6_1_C7LV4ACXX.IND8_noribo_clean.fastq BIL_BDKOSW_6_2_C7LV4ACXX.IND8_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDK.count G1214_BDK.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810092 PRJEB3908 Gay et al, 2020 BCH BIL007 CV.Alpaga résidus de culture NA NA 01/08/2014 rep1 82262106 4,785603228 3936738 4,57703575 3765166 3 2 0,208567478 171572 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCHOSW_6_1_C79GFACXX.IND2_noribo_clean.fastq BIL_BCHOSW_6_2_C79GFACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCH.count G1214_BCH.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810073 PRJEB3908 Gay et al, 2020 BCQ BIL015 CV.Alpaga résidus de culture NA NA 01/08/2014 rep2 73811070 31,11533676 22966563 30,62195955 22602396 0 4 0,493377213 364167 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BCQOSW_8_1_C79GFACXX.IND23_noribo_clean.fastq BIL_BCQOSW_8_2_C79GFACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BCQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BCQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BCQ.count G1214_BCQ.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BCQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810079 PRJEB3908 Gay et al, 2020 BDD BIL023 CV.Alpaga résidus de culture NA NA 01/08/2014 rep3 78550969 4,752667023 3733266 4,744436698 3726801 0 1 0,008230325 6465 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDDOSW_3_1_C7LV4ACXX.IND3_noribo_clean.fastq BIL_BDDOSW_3_2_C7LV4ACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDD.count G1214_BDD.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810086 PRJEB3908 Gay et al, 2020 BDL BIL030 CV.Alpaga résidus de culture NA NA 01/08/2014 rep4 59875453 18,32944963 10974841 18,32010357 10969245 0 0 0,009346067 5596 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDLOSW_7_1_C7LV4ACXX.IND9_noribo_clean.fastq BIL_BDLOSW_7_2_C7LV4ACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDL.count G1214_BDL.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810093 PRJEB3908 Gay et al, 2020 AMN BIL264 NA NA Lmb-JN2 NA 7 jours Rep1 croisement 23816344 84,21116188 20056020 84,16533201 20045105 0 0 0,045829872 10915 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMNOSW_2_1_C7C89ACXX.IND14_noribo_clean.fastq BIL_AMNOSW_2_2_C7C89ACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMN.count G1214_AMN.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810046 PRJEB3908 Gay et al, 2020 AMP BIL265 NA NA Nz-t4 NA 7 jours Rep1 croisement 22996032 83,07372333 19103660 82,99364429 19085245 0 0 0,080079033 18415 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMPOSW_2_1_C7C89ACXX.IND15_noribo_clean.fastq BIL_AMPOSW_2_2_C7C89ACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMP.count G1214_AMP.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810047 PRJEB3908 Gay et al, 2020 AMQ BIL266 NA NA Lmb, Nz-t4 NA 7 jours Rep1 croisement 19507970 82,16332607 16028397 82,13180562 16022248 0 1 0,03152045 6149 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMQOSW_2_1_C7C89ACXX.IND18_noribo_clean.fastq BIL_AMQOSW_2_2_C7C89ACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMQ.count G1214_AMQ.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMR BIL267 NA NA Lmb-JN2 NA 20 jours Rep1 croisement 20851386 80,96510227 16882346 80,92573798 16874138 0 0 0,03936429 8208 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMROSW_2_1_C7C89ACXX.IND19_noribo_clean.fastq BIL_AMROSW_2_2_C7C89ACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMR.count G1214_AMR.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810048 PRJEB3908 Gay et al, 2020 AMS BIL268 NA NA Nz-t4 NA 20 jours Rep1 croisement 21953184 78,8235456 17304278 78,78841174 17296565 0 0 0,035133856 7713 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMSOSW_3_1_C7C89ACXX.IND20_noribo_clean.fastq BIL_AMSOSW_3_2_C7C89ACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMS.count G1214_AMS.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810049 PRJEB3908 Gay et al, 2020 AMT BIL269 NA NA Lmb, Nz-t4 NA 20 jours Rep1 croisement 19529976 76,25203943 14892005 76,20564408 14882944 0 0 0,046395346 9061 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMTOSW_3_1_C7C89ACXX.IND21_noribo_clean.fastq BIL_AMTOSW_3_2_C7C89ACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMT.count G1214_AMT.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMV BIL270 NA NA Lmb-JN2 NA 35 jours Rep1 croisement 19402954 77,68515042 15073214 77,64553274 15065527 0 0 0,039617679 7687 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMVOSW_3_1_C7C89ACXX.IND22_noribo_clean.fastq BIL_AMVOSW_3_2_C7C89ACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMV.count G1214_AMV.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810050 PRJEB3908 Gay et al, 2020 ANA BIL271 NA NA Nz-t4 NA 35 jours Rep1 croisement 19169719 74,6784499 14315649 74,62372818 14305159 0 0 0,05472172 10490 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANAOSW_3_1_C7C89ACXX.IND23_noribo_clean.fastq BIL_ANAOSW_3_2_C7C89ACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANA.count G1214_ANA.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810051 PRJEB3908 Gay et al, 2020 ANB BIL272 NA NA Lmb, Nz-t4 NA 35 jours Rep1 croisement 20446730 74,6838492 15270405 74,62177571 15257713 1 0 0,062073495 12692 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANBOSW_3_1_C7C89ACXX.IND25_noribo_clean.fastq BIL_ANBOSW_3_2_C7C89ACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANB.count G1214_ANB.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQN BIL273 NA NA Lmb-JN2 NA 7 jours Rep2 croisement 23786838 80,99991684 19267319 80,97370907 19261085 0 8 0,026207771 6234 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQNOSW_4_1_C7CAFACXX.IND21_noribo_clean.fastq BIL_AQNOSW_4_2_C7CAFACXX.IND21_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQN.count G1214_AQN.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810057 PRJEB3908 Gay et al, 2020 AQP BIL274 NA NA Nz-t4 NA 7 jours Rep2 croisement 22969651 78,01904783 17920703 77,97563838 17910732 0 0 0,043409454 9971 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQPOSW_1_1_C7BE0ACXX.IND22_noribo_clean.fastq BIL_AQPOSW_1_2_C7BE0ACXX.IND22_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQP.count G1214_AQP.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810058 PRJEB3908 Gay et al, 2020 AQQ BIL275 NA NA Lmb, Nz-t4 NA 7 jours Rep2 croisement 20225483 77,90465128 15756592 77,85353754 15746254 0 0 0,051113736 10338 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQQOSW_1_1_C7BE0ACXX.IND23_noribo_clean.fastq BIL_AQQOSW_1_2_C7BE0ACXX.IND23_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQQ.count G1214_AQQ.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQR BIL276 NA NA Lmb-JN2 NA 20 jours Rep2 croisement 20308977 77,07830877 15653816 77,05071998 15648213 0 0 0,027588785 5603 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQROSW_1_1_C7BE0ACXX.IND25_noribo_clean.fastq BIL_AQROSW_1_2_C7BE0ACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQR.count G1214_AQR.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153291 PRJEB21682 Dutreux et al, 2018 / Gay et al, 2020 AQS BIL277 NA NA Nz-t4 NA 20 jours Rep2 croisement 18625028 70,19458441 13073761 70,13742476 13063115 8 0 0,057159646 10646 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQSOSW_1_1_C7BE0ACXX.IND27_noribo_clean.fastq BIL_AQSOSW_1_2_C7BE0ACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQS.count G1214_AQS.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810059 PRJEB3908 Gay et al, 2020 AQT BIL278 NA NA Lmb, Nz-t4 NA 20 jours Rep2 croisement 20334399 70,08795293 14251964 70,02229572 14238613 4 0 0,065657215 13351 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQTOSW_1_1_C7BE0ACXX.IND1_noribo_clean.fastq BIL_AQTOSW_1_2_C7BE0ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQT.count G1214_AQT.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQV BIL279 NA NA Lmb-JN2 NA 35 jours Rep2 croisement 23081212 75,76888943 17488378 75,72844528 17479043 0 0 0,04044415 9335 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQVOSW_4_1_C7CAFACXX.IND2_noribo_clean.fastq BIL_AQVOSW_4_2_C7CAFACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQV.count G1214_AQV.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810060 PRJEB3908 Gay et al, 2020 ARA BIL280 NA NA Nz-t4 NA 35 jours Rep2 croisement 18640625 67,92534585 12661709 67,86225247 12649948 0 0 0,063093378 11761 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARAOSW_6_1_C7C8BACXX.IND25_noribo_clean.fastq BIL_ARAOSW_6_2_C7C8BACXX.IND25_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARA.count G1214_ARA.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810061 PRJEB3908 Gay et al, 2020 ARB BIL281 NA NA Lmb, Nz-t4 NA 35 jours Rep2 croisement 27685450 71,44586778 19780110 71,41117807 19770506 3 0 0,034689702 9604 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARBOSW_4_1_C7CAFACXX.IND4_noribo_clean.fastq BIL_ARBOSW_4_2_C7CAFACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARB " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARB /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARB JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARB/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARB/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARB.count G1214_ARB.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARB/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANC BIL282 NA spores germantes Lmb-JN2 NA 10 jours Rep 1 Portoir 85 20861158 87,07946126 18165784 87,01479084 18152293 0 0 0,064670427 13491 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANCOSW_3_1_C7C89ACXX.IND27_noribo_clean.fastq BIL_ANCOSW_3_2_C7C89ACXX.IND27_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANC.count G1214_ANC.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810052 PRJEB3908 Gay et al, 2020 AND BIL283 NA spores germantes Lmb-Nz-T4 NA 10 jours Rep 1 Huile 20002973 85,16804977 17036142 85,11077828 17024686 2 0 0,057271487 11456 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANDOSW_3_1_C7C89ACXX.IND1_noribo_clean.fastq BIL_ANDOSW_3_2_C7C89ACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AND " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AND /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AND JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AND/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AND/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AND.count G1214_AND.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AND/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANE BIL284 NA spores germantes Lbb-G12-14 NA 10 jours Rep 1 NA 20227711 81,34373187 16453975 0,207324497 41937 0 0 81,13640738 16412038 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANEOSW_3_1_C7C89ACXX.IND2_noribo_clean.fastq BIL_ANEOSW_3_2_C7C89ACXX.IND2_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANE.count G1214_ANE.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANF BIL285 NA spores germantes Lmb-JN2 NA 10 jours Rep 2 Portoir 85 23888673 86,20367485 20592914 86,12405553 20573894 1 0 0,079619324 19020 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANFOSW_4_1_C7C89ACXX.IND3_noribo_clean.fastq BIL_ANFOSW_4_2_C7C89ACXX.IND3_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANF.count G1214_ANF.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810053 PRJEB3908 Gay et al, 2020 ANG BIL286 NA spores germantes Lmb-Nz-T4 NA 10 jours Rep 2 Huile 21628545 86,49492141 18707593 86,40628392 18688422 0 0 0,088637493 19171 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANGOSW_4_1_C7C89ACXX.IND4_noribo_clean.fastq BIL_ANGOSW_4_2_C7C89ACXX.IND4_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANG.count G1214_ANG.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANH BIL287 NA spores germantes Lbb-G12-14 NA 10 jours Rep 2 NA 19612061 81,29683056 15943984 0,14676173 28783 0 0 81,15006883 15915201 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANHOSW_4_1_C7C89ACXX.IND5_noribo_clean.fastq BIL_ANHOSW_4_2_C7C89ACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANH.count G1214_ANH.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANI BIL288 NA spores non germantes Lmb-JN2 NA 10 jours Rep 1 Portoir 85 22229719 83,25039556 18506329 83,22246449 18500120 0 0 0,027931077 6209 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANIOSW_4_1_C7C89ACXX.IND6_noribo_clean.fastq BIL_ANIOSW_4_2_C7C89ACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANI.count G1214_ANI.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810054 PRJEB3908 Gay et al, 2020 ANK BIL289 NA spores non germantes Lmb-Nz-T4 NA 10 jours Rep 1 Huile 21690574 82,47905749 17890181 82,44779507 17883400 0 0 0,031262428 6781 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANKOSW_4_1_C7C89ACXX.IND7_noribo_clean.fastq BIL_ANKOSW_4_2_C7C89ACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANK.count G1214_ANK.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANL BIL290 NA spores non germantes Lbb-G12-14 NA 10 jours Rep 1 NA 18377600 81,2809997 14937497 0,054990858 10106 0 0 81,22600884 14927391 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANLOSW_4_1_C7C89ACXX.IND9_noribo_clean.fastq BIL_ANLOSW_4_2_C7C89ACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANL.count G1214_ANL.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANM BIL291 NA spores non germantes Lmb-JN2 NA 10 jours Rep 2 Portoir 85 25054815 83,01808654 20800028 83,00021772 20795551 0 0 0,017868821 4477 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANMOSW_4_1_C7C89ACXX.IND10_noribo_clean.fastq BIL_ANMOSW_4_2_C7C89ACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANM.count G1214_ANM.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810055 PRJEB3908 Gay et al, 2020 ANN BIL292 NA spores non germantes Lmb-Nz-T4 NA 10 jours Rep 2 Huile 20570385 82,4429781 16958838 82,40674154 16951384 0 0 0,03623656 7454 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANNOSW_4_1_C7C89ACXX.IND11_noribo_clean.fastq BIL_ANNOSW_4_2_C7C89ACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANN.count G1214_ANN.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANP BIL293 NA spores non germantes Lbb-G12-14 NA 10 jours Rep 2 NA 22758734 79,91370258 18187347 0,013752962 3130 0 0 79,89994962 18184217 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANPOSW_2_1_C7AD3ACXX.IND12_noribo_clean.fastq BIL_ANPOSW_2_2_C7AD3ACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANP.count G1214_ANP.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMI BIL256 NA Mycelium-fries Lmb-JN2 NA 7 jours Rep 1 NA 16800535 83,02073714 13947928 82,97820873 13940783 7 27 0,042528408 7145 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMIOSW_2_1_C7C89ACXX.IND10_noribo_clean.fastq BIL_AMIOSW_2_2_C7C89ACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMI.count G1214_AMI.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153288 PRJEB21682 Dutreux et al, 2018 / Gay et al, 2020 AMK BIL257 NA Mycelium-fries Lmb-Nz-T4 NA 7 jours Rep 1 NA 15972315 82,57686503 13189437 82,53965064 13183493 15 0 0,037214393 5944 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMKOSW_2_1_C7C89ACXX.IND11_noribo_clean.fastq BIL_AMKOSW_2_2_C7C89ACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMK.count G1214_AMK.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153289 PRJEB21682 Dutreux et al, 2018 AML BIL258 NA Mycelium-fries Lbb-G12-14 NA 7 jours Rep 1 NA 17151904 80,32691881 13777596 0,066738946 11447 0 0 80,26017986 13766149 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMLOSW_2_1_C7C89ACXX.IND12_noribo_clean.fastq BIL_AMLOSW_2_2_C7C89ACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AML " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AML /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AML JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AML/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AML/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AML.count G1214_AML.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AML/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AMM BIL259 NA Mycelium-fries Lmb-JN2, Lbb-G12-14 NA 7 jours Rep 1 NA 18628593 80,39764463 14976950 0,977572488 182108 0 0 79,42007214 14794842 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AMMOSW_2_1_C7C89ACXX.IND13_noribo_clean.fastq BIL_AMMOSW_2_2_C7C89ACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AMM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AMM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AMM.count G1214_AMM.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AMM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANQ BIL294 NA mycelium Lmb-JN2 bord NA Rep 1 portoir85 23637901 81,18997537 19191606 81,10745535 19172100 0 66 0,082520017 19506 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANQOSW_2_1_C7AD3ACXX.IND13_noribo_clean.fastq BIL_ANQOSW_2_2_C7AD3ACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANQ.count G1214_ANQ.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANR BIL295 NA mycelium Lmb-JN2 centre NA Rep 1 portoir85 18781959 82,45825688 15487276 82,41286758 15478751 0 12 0,045389302 8525 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANROSW_2_1_C7AD3ACXX.IND14_noribo_clean.fastq BIL_ANROSW_2_2_C7AD3ACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANR.count G1214_ANR.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANS BIL296 NA mycelium Lmb-Nz-T4 bord NA Rep 1 Huile 20569949 81,60045511 16785172 81,56270587 16777407 3 0 0,037749243 7765 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANSOSW_2_1_C7AD3ACXX.IND15_noribo_clean.fastq BIL_ANSOSW_2_2_C7AD3ACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANS.count G1214_ANS.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANT BIL297 NA mycelium Lmb-Nz-T4 centre NA Rep 1 Huile 16437776 78,85505314 12962017 78,78535393 12950560 0 0 0,06969921 11457 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANTOSW_2_1_C7AD3ACXX.IND16_noribo_clean.fastq BIL_ANTOSW_2_2_C7AD3ACXX.IND16_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANT.count G1214_ANT.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ANV BIL298 NA mycelium Lbb-G12-14 bord NA Rep 1 NA 22576623 77,12468335 17412149 0,037591982 8487 0 0 77,08709137 17403662 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ANVOSW_2_1_C7AD3ACXX.IND18_noribo_clean.fastq BIL_ANVOSW_2_2_C7AD3ACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ANV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ANV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ANV.count G1214_ANV.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ANV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife APA BIL299 NA mycelium Lbb-G12-14 centre NA Rep 1 NA 19061879 78,37704247 14940137 0,034477189 6572 0 0 78,34256528 14933565 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_APAOSW_2_1_C7AD3ACXX.IND19_noribo_clean.fastq BIL_APAOSW_2_2_C7AD3ACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APA " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APA /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/APA JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) APA/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APA/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_APA.count G1214_APA.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/APA/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife SAMEA104153290 PRJEB21682 Dutreux et al, 2018 AQI BIL260 NA Mycelium-Fries Lmb-JN2 NA 7 jours Rep 2 NA 18160771 83,29290095 15126633 83,17208559 15104692 1 7 0,120815355 21941 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQIOSW_7_1_C7KFAACXX.IND15_noribo_clean.fastq BIL_AQIOSW_7_2_C7KFAACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQI " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQI /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQI JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQI/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQI/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQI.count G1214_AQI.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQI/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810056 PRJEB3908 Gay et al, 2020 AQK BIL261 NA Mycelium-Fries Lmb-Nz-T4 NA 7 jours Rep 2 NA 33325953 82,21432707 27398708 82,19089189 27390898 57 0 0,023435189 7810 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQKOSW_4_1_C7CAFACXX.IND18_noribo_clean.fastq BIL_AQKOSW_4_2_C7CAFACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQK.count G1214_AQK.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQL BIL262 NA Mycelium-Fries Lbb-G12-14 NA 7 jours Rep 2 NA 19994372 79,85910235 15967326 0,063422847 12681 0 0 79,7956795 15954645 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQLOSW_1_1_C7BE0ACXX.IND19_noribo_clean.fastq BIL_AQLOSW_1_2_C7BE0ACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQL.count G1214_AQL.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AQM BIL263 NA Mycelium-Fries Lmb-JN2, Lbb-G12-14 NA 7 jours Rep 2 NA 23439573 79,11298981 18543747 0,307723182 72129 0 0 78,80526663 18471618 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AQMOSW_1_1_C7BE0ACXX.IND20_noribo_clean.fastq BIL_AQMOSW_1_2_C7BE0ACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AQM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AQM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AQM.count G1214_AQM.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AQM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARC BIL300 NA mycelium Lmb-JN2 bord NA Rep 2 portoir85 21069868 82,10543607 17299507 82,08119291 17294399 1 2 0,024243151 5108 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARCOSW_4_1_C7CAFACXX.IND5_noribo_clean.fastq BIL_ARCOSW_4_2_C7CAFACXX.IND5_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARC " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARC /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARC JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARC/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARC/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARC.count G1214_ARC.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARC/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARD BIL301 NA mycelium Lmb-JN2 centre NA Rep 2 portoir85 19161160 82,45371888 15799089 82,43860497 15796193 0 0 0,015113908 2896 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARDOSW_4_1_C7CAFACXX.IND6_noribo_clean.fastq BIL_ARDOSW_4_2_C7CAFACXX.IND6_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARD " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARD /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARD JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARD/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARD/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARD.count G1214_ARD.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARD/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARE BIL302 NA mycelium Lmb-Nz-T4 bord NA Rep 2 Huile 19805592 81,10701261 16063724 81,07905585 16058187 0 0 0,027956751 5537 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_AREOSW_4_1_C7CAFACXX.IND7_noribo_clean.fastq BIL_AREOSW_4_2_C7CAFACXX.IND7_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARE " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARE /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARE JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARE/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARE/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARE.count G1214_ARE.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARE/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARF BIL303 NA mycelium Lmb-Nz-T4 centre NA Rep 2 Huile 14269566 81,19292486 11585878 81,01415979 11560369 0 0 0,178765072 25509 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARFOSW_6_1_C7C8BACXX.IND1_noribo_clean.fastq BIL_ARFOSW_6_2_C7C8BACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARF " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARF /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARF JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARF/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARF/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARF.count G1214_ARF.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARF/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARG BIL304 NA mycelium Lbb-G12-14 bord NA Rep 2 NA 21064972 80,20897915 16895999 0,034450556 7257 0 0 80,1745286 16888742 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARGOSW_6_1_C7C8BACXX.IND10_noribo_clean.fastq BIL_ARGOSW_6_2_C7C8BACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARG " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARG /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARG JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARG/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARG/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARG.count G1214_ARG.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARG/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ARH BIL305 NA mycelium Lbb-G12-14 centre NA Rep 2 NA 17365368 78,41608079 13617241 0,057620432 10006 0 0 78,35846036 13607235 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ARHOSW_6_1_C7C8BACXX.IND11_noribo_clean.fastq BIL_ARHOSW_6_2_C7C8BACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARH " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARH /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ARH JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ARH/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARH/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ARH.count G1214_ARH.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ARH/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASK BIL326 NA Mycelium-V8 Lmb-JN2 NA NA Rep 1 NA 19249684 82,87705918 15953572 82,83486628 15945450 1 2 0,0421929 8122 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASKOSW_7_1_C7KFAACXX.IND9_noribo_clean.fastq BIL_ASKOSW_7_2_C7KFAACXX.IND9_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASK " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASK /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASK JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASK/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASK/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASK.count G1214_ASK.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASK/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810062 PRJEB3908 Gay et al, 2020 ASL BIL327 NA Mycelium-V8 Lbb-G12-14 NA NA Rep 1 NA 19165176 80,68530652 15463481 0,041575407 7968 0 0 80,64373111 15455513 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASLOSW_7_1_C7KFAACXX.IND10_noribo_clean.fastq BIL_ASLOSW_7_2_C7KFAACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASL " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASL /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASL JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASL/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASL/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASL.count G1214_ASL.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASL/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASM BIL328 NA Mycelium-V8 Lmb-JN2, Lbb-G12-14 NA NA Rep 1 NA 19458892 80,81862009 15726408 0,299482622 58276 0 0 80,51913747 15668132 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASMOSW_7_1_C7KFAACXX.IND11_noribo_clean.fastq BIL_ASMOSW_7_2_C7KFAACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASM.count G1214_ASM.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASN BIL329 NA Mycelium-V8 Lmb-JN2 NA NA Rep 2 NA 20179665 83,11005163 16771330 83,07546235 16764350 0 4 0,034589276 6980 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASNOSW_7_1_C7KFAACXX.IND12_noribo_clean.fastq BIL_ASNOSW_7_2_C7KFAACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASN.count G1214_ASN.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810063 PRJEB3908 Gay et al, 2020 ASP BIL330 NA Mycelium-V8 Lbb-G12-14 NA NA Rep 2 NA 17847194 81,49551689 14544663 0,174072182 31067 0 0 81,3214447 14513596 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASPOSW_7_1_C7KFAACXX.IND13_noribo_clean.fastq BIL_ASPOSW_7_2_C7KFAACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASP.count G1214_ASP.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASQ BIL331 NA Mycelium-V8 Lmb-JN2, Lbb-G12-14 NA NA Rep 2 NA 20977072 79,95019991 16771211 0,110673215 23216 0 0 79,8395267 16747995 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASQOSW_7_1_C7KFAACXX.IND14_noribo_clean.fastq BIL_ASQOSW_7_2_C7KFAACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASQ.count G1214_ASQ.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASR BIL332 NA mycelium Lmb-JN2 NA NA Rep 1 NA 20562490 84,44186477 17363350 84,37302583 17349195 17 56 0,068838939 14155 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASROSW_7_1_C7KFAACXX.IND1_noribo_clean.fastq BIL_ASROSW_7_2_C7KFAACXX.IND1_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASR.count G1214_ASR.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASS BIL333 NA mycelium Lmb-JN2 NA NA Rep 2 NA 22829211 84,84020319 19368349 84,80222115 19359678 20 85 0,03798204 8671 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASSOSW_6_1_C7C8BACXX.IND18_noribo_clean.fastq BIL_ASSOSW_6_2_C7C8BACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASS.count G1214_ASS.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife AST BIL334 NA mycelium Lmb-JN2 NA NA Rep 1 +1ug cycloheximine 21263041 85,02617288 18079150 84,97437408 18068136 209 399 0,0517988 11014 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASTOSW_6_1_C7C8BACXX.IND19_noribo_clean.fastq BIL_ASTOSW_6_2_C7C8BACXX.IND19_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AST " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AST /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/AST JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) AST/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AST/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_AST.count G1214_AST.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/AST/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ASV BIL335 NA mycelium Lmb-JN2 NA NA Rep 2 +1ug cycloheximine 25606054 84,21025746 21562924 84,14997875 21547489 539 541 0,060278714 15435 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_ASVOSW_6_1_C7C8BACXX.IND20_noribo_clean.fastq BIL_ASVOSW_6_2_C7C8BACXX.IND20_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASV " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASV /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/ASV JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) ASV/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASV/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_ASV.count G1214_ASV.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/ASV/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BDM BIL336 Bristol Cotyledons NA NA 24h Rep 1 Pool 19,20,23,24 77183188 0,005191545 4007 0,004880597 3767 0 0 0,000310949 240 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDMOSW_7_1_C7LV4ACXX.IND10_noribo_clean.fastq BIL_BDMOSW_7_2_C7LV4ACXX.IND10_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDM " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDM /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDM JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDM/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDM/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDM.count G1214_BDM.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDM/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810094 PRJEB3908 Gay et al, 2020 BDN BIL337 Bristol Cotyledons NA NA 24h Rep 1 Pool 17,18,21,22 84368940 0,000823763 695 0,000629379 531 2 1 0,000194384 164 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDNOSW_8_1_C7LV4ACXX.IND11_noribo_clean.fastq BIL_BDNOSW_8_2_C7LV4ACXX.IND11_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDN " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDN /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDN JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDN/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDN/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDN.count G1214_BDN.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDN/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810095 PRJEB3908 Gay et al, 2020 BDP BIL338 Bristol Cotyledons NA NA 48h Rep 1 Pool 17,18,21,22 85682895 0,002168461 1858 0,001121577 961 2 3 0,001046883 897 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDPOSW_8_1_C7LV4ACXX.IND12_noribo_clean.fastq BIL_BDPOSW_8_2_C7LV4ACXX.IND12_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDP " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDP /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDP JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDP/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDP/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDP.count G1214_BDP.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDP/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810096 PRJEB3908 Gay et al, 2020 BDQ BIL339 Bristol Cotyledons NA NA 24h Rep 2 Pool 19,20,23,24 77063159 0,001030324 794 0,00064233 495 12 3 0,000387993 299 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDQOSW_1_1_C7LY4ACXX.IND13_noribo_clean.fastq BIL_BDQOSW_1_2_C7LY4ACXX.IND13_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDQ " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDQ /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDQ JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDQ/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDQ/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDQ.count G1214_BDQ.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDQ/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810097 PRJEB3908 Gay et al, 2020 BDR BIL340 Bristol Cotyledons NA NA 48h Rep 2 Pool 19,20,23,24 95847572 0,004868146 4666 0,004663655 4470 31 28 0,000204491 196 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDROSW_1_1_C7LY4ACXX.IND14_noribo_clean.fastq BIL_BDROSW_1_2_C7LY4ACXX.IND14_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDR " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDR /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDR JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDR/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDR/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDR.count G1214_BDR.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDR/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810098 PRJEB3908 Gay et al, 2020 BDS BIL341 Bristol Cotyledons NA NA 24h Rep 2 Pool 17,18,21,22 97500080 0,000413333 403 0,00032923 321 1 0 8,41025E-05 82 Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDSOSW_2_1_C7LY4ACXX.IND15_noribo_clean.fastq BIL_BDSOSW_2_2_C7LY4ACXX.IND15_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDS " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDS /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDS JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDS/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDS/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDS.count G1214_BDS.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDS/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife ERS4810099 PRJEB3908 Gay et al, 2020 BDT BIL342 Bristol Cotyledons NA NA 48h Rep 2 pool 17,18,21,22 NA NA NA NA NA NA NA NA NA Trizol (see Dutreux et al ., 2018) TrueSeq Standard mRNA kit 101 pb paired-end cDNA Genoscope Illumina HiSeq 2000 BIL_BDTOSW_2_1_C7LY4ACXX.IND18_noribo_clean.fastq BIL_BDTOSW_2_2_C7LY4ACXX.IND18_noribo_clean.fastq /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDT " office : 157 ; Lacie 10T" /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDT /ccc/store/cont007/fg0037/fg0037/rawdata/projet_BIL/AAA/RunsSolexa/141127_SOUFRE_C4VJ6ACXX/BDT JN3.fasta and G1214.fasta (Dutreux et al., 2018) Darmor-bzh_v4-1_AllChr_with_random.fasta (loaded from geneouest) BDT/All_properly_paired.bam /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDT/All_properly_paired.bam " office : 157 ; Lacie 10T ; related person : Elise GAY ;" No_count_on_BnapusNo_count_on_Bnapus JN3_BDT.count G1214_BDT.count No_count_on_Bnapus No_count_on_BnapusNo_count_on_Bnapus /ccc/store/cont007/fg0037/gayelise/ressources/fastq/mapping_on_published_version/BDT/ " office : 157 ; Lacie 10T ; related person : Elise GAY ;" LeptoLife BIL_BDIOSW_6_1_C7LV4ACXX.IND7_noribo_clean.fastq BIL_BDIOSW_6_2_C7LV4ACXX.IND7_noribo_clean.fastq BIL_BDKOSW_6_1_C7LV4ACXX.IND8_noribo_clean.fastq BIL_BDKOSW_6_2_C7LV4ACXX.IND8_noribo_clean.fastq BIL_BDLOSW_7_1_C7LV4ACXX.IND9_noribo_clean.fastq BIL_BDLOSW_7_2_C7LV4ACXX.IND9_noribo_clean.fastq BIL_BDMOSW_7_1_C7LV4ACXX.IND10_noribo_clean.fastq BIL_BDMOSW_7_2_C7LV4ACXX.IND10_noribo_clean.fastq BIL_BDNOSW_8_1_C7LV4ACXX.IND11_noribo_clean.fastq BIL_BDNOSW_8_2_C7LV4ACXX.IND11_noribo_clean.fastq BIL_BDPOSW_8_1_C7LV4ACXX.IND12_noribo_clean.fastq BIL_BDPOSW_8_2_C7LV4ACXX.IND12_noribo_clean.fastq BIL_BDQOSW_1_1_C7LY4ACXX.IND13_noribo_clean.fastq BIL_BDQOSW_1_2_C7LY4ACXX.IND13_noribo_clean.fastq BIL_BDROSW_1_1_C7LY4ACXX.IND14_noribo_clean.fastq BIL_BDROSW_1_2_C7LY4ACXX.IND14_noribo_clean.fastq BIL_BDSOSW_2_1_C7LY4ACXX.IND15_noribo_clean.fastq BIL_BDSOSW_2_2_C7LY4ACXX.IND15_noribo_clean.fastq BIL_BDTOSW_2_1_C7LY4ACXX.IND18_noribo_clean.fastq BIL_BDTOSW_2_2_C7LY4ACXX.IND18_noribo_clean.fastq