Publication :
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Dallery JF, Lapalu N, Zampounis A, Pigné S, Luyten I, Amselem J, Wittenberg AHJ, Zhou S, de Queiroz MV, Robin GP, Auger A, Hainaut M, Henrissat B, Kim KT, Lee YH, Lespinet O, Schwartz DC, Thon MR, O'Connell RJ. Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters. BMC Genomics. 2017 Aug 29;18(1):667. doi: 10.1186/s12864-017-4083-x. PMID: 28851275; PMCID: PMC5576322.
https://doi.org/10.1186/s12864-017-4083-x


Genome repository :
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The assembly and annotation generated in this study are available in the Genbank repository under the accession number LTAN00000000, with locus tags in the format CH63R_00000. These data are associated with NCBI BioProject PRJNA47061 and BioSample SAMN04420120. All PacBio and Illumina sequencing reads are available from the Genbank short read archive under SRA study number SRP069807.


Transposable elements repository :
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IMI349063 Colletotrichim higginsianum transposable elements are available from INRAE-URGI :
Files : https://urgi.versailles.inrae.fr/download/fungi/TEs/
RepetDB database : https://urgi.versailles.inrae.fr/repetdb/begin.do#search?taxonGroup=759273


Dedicated BioinfoBioger Genome Portal for IMI349063 Colletotrichum higginsianum :
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https://bioinfo.bioger.inrae.fr/portal/genome-portal/5/